This repository contains the data and code to accompany the manuscript:
Katie L. Barott, Ariana S. Huffmyer, Jennifer M. Davidson, Elizabeth A. Lenz, Shayle B. Matsuda, Joshua R. Hancock, Teegan Innis, Crawford Drury, Hollie M. Putnam, Ruth D. Gates (2021). Coral bleaching response is unaltered following acclimatization to reefs with distinct environmental conditions
Repository contents:
Data/:
PAR.csv: Summary Odyssey light logger data for both inner lagoon and outer lagoon
RTE_Frags.csv: Response variables for each fragment involved in the reciprocal transplant
RTE_Genotypes.csv: Averaged response variables for all fragments per genotype involved in the reciprocal transplant
RTE Metadata.csv: Column descriptions for "RTE_Frags.csv" and "RTE_Genotypes.csv"
EnvData.csv: SeapHOx environmental data for inner lagoon and outer lagoon (PR4, PR13)
SpawnDynamic.csv: Data for MCAP spawning activity
Stress_Master.csv: Response variables for each fragment involved in the thermal challenge
flow.csv: Flow regime data for inner lagoon and outer lagoon (PR4, PR13)
sedimentation.csv: Sedimentation rate data for inner lagoon and outer lagoon (PR4, PR13)
Analysis/:
MixedModelAnalysis.R: Linear mixed effect models for reciprocal transplant
Odyssey.R: Analysis of PAR at each lagoon site
ResponseSummaries.R: Code to generate summary figures
EnvSummary.R: Analysis of environmental regimes at each lagoon site
StressModelAnalysis.R: Linear mixed effect models for thermal challenge
StressTest.R: Code to generate thermal challenge figures
flow.R: Code to analyze flow dynamics at each lagoon site
sedimentation.R: Code to analyze sedimentation rates at each lagoon site
NMDS.R: Code for multivariate analyses