Migrate from ProcessBuilder to LabKeyProcessBuilder

Author: labkey-jeckels

nextflow/src/org/labkey/nextflow/pipeline/NextFlowRunTask.java

@@ -79,7 +79,7 @@ public NextFlowRunTask(Factory factory, PipelineJob job)
             FileLike dir = getJob().getLogFileLike().getParent();
             getJob().runSubProcess(secretsPB, dir);
 
-            ProcessBuilder executionPB = new ProcessBuilder(getArgs());
+            LabKeyProcessBuilder executionPB = new LabKeyProcessBuilder(getArgs());
             getJob().runSubProcess(executionPB, dir);
             log.info("Job Finished");
             NextFlowPipelineJob.LOG.info("Finished executing NextFlow: {}", getJob().getJsonJobInfo(true));