From 88cc58bbf8d130ae7eb550fe37c5e9b6340d6a55 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 10 Sep 2025 13:39:29 +0000
Subject: [PATCH 1/7] Initial plan


From 0df91d144b44b5055c7028e5be3f357cf7d429be Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 10 Sep 2025 14:12:11 +0000
Subject: [PATCH 2/7] Implement bash timeout support for neutral tools - Part 1

- Add timeout option to bash tool configuration schema
- Add SupportsBashTimeout() capability to engine interface
- Implement timeout configuration parsing in claude_engine.go
- Add validation to fail compilation if agent doesn't support timeout
- Add comprehensive tests for timeout functionality
- Update engine capabilities: Claude supports timeout, Codex/Custom do not

Still debugging why timeout env vars don't appear in generated workflow.

Co-authored-by: pelikhan <4175913+pelikhan@users.noreply.github.com>
---
 pkg/parser/schemas/main_workflow_schema.json |  35 ++
 pkg/workflow/agentic_engine.go               |   8 +
 pkg/workflow/bash_timeout_test.go            | 385 +++++++++++++++++++
 pkg/workflow/claude_engine.go                |  95 ++++-
 pkg/workflow/codex_engine.go                 |   1 +
 pkg/workflow/compiler.go                     |  24 ++
 pkg/workflow/custom_engine.go                |   3 +-
 7 files changed, 547 insertions(+), 4 deletions(-)
 create mode 100644 pkg/workflow/bash_timeout_test.go

diff --git a/pkg/parser/schemas/main_workflow_schema.json b/pkg/parser/schemas/main_workflow_schema.json
index 90078304fe8..c504961294c 100644
--- a/pkg/parser/schemas/main_workflow_schema.json
+++ b/pkg/parser/schemas/main_workflow_schema.json
@@ -998,6 +998,41 @@
               "items": {
                 "type": "string"
               }
+            },
+            {
+              "type": "object",
+              "description": "Bash tool configuration with timeout and optional commands",
+              "properties": {
+                "timeout": {
+                  "description": "Timeout for bash commands in seconds",
+                  "oneOf": [
+                    {
+                      "type": "integer",
+                      "minimum": 1
+                    },
+                    {
+                      "type": "string",
+                      "pattern": "^[0-9]+(\\.\\d+)?$"
+                    }
+                  ]
+                },
+                "commands": {
+                  "description": "List of allowed bash commands",
+                  "type": "array",
+                  "items": {
+                    "type": "string"
+                  }
+                },
+                "allowed": {
+                  "description": "List of allowed bash commands (alias for commands)",
+                  "type": "array",
+                  "items": {
+                    "type": "string"
+                  }
+                }
+              },
+              "additionalProperties": false,
+              "required": ["timeout"]
             }
           ]
         },
diff --git a/pkg/workflow/agentic_engine.go b/pkg/workflow/agentic_engine.go
index 210f6fa01d5..3d4fb6a9bef 100644
--- a/pkg/workflow/agentic_engine.go
+++ b/pkg/workflow/agentic_engine.go
@@ -35,6 +35,9 @@ type CodingAgentEngine interface {
 	// SupportsMaxTurns returns true if this engine supports the max-turns feature
 	SupportsMaxTurns() bool
 
+	// SupportsBashTimeout returns true if this engine supports bash timeout configuration
+	SupportsBashTimeout() bool
+
 	// GetDeclaredOutputFiles returns a list of output files that this engine may produce
 	// These files will be automatically uploaded as artifacts if they exist
 	GetDeclaredOutputFiles() []string
@@ -64,6 +67,7 @@ type BaseEngine struct {
 	supportsToolsWhitelist bool
 	supportsHTTPTransport  bool
 	supportsMaxTurns       bool
+	supportsBashTimeout    bool
 }
 
 func (e *BaseEngine) GetID() string {
@@ -94,6 +98,10 @@ func (e *BaseEngine) SupportsMaxTurns() bool {
 	return e.supportsMaxTurns
 }
 
+func (e *BaseEngine) SupportsBashTimeout() bool {
+	return e.supportsBashTimeout
+}
+
 // GetDeclaredOutputFiles returns an empty list by default (engines can override)
 func (e *BaseEngine) GetDeclaredOutputFiles() []string {
 	return []string{}
diff --git a/pkg/workflow/bash_timeout_test.go b/pkg/workflow/bash_timeout_test.go
new file mode 100644
index 00000000000..100d61b1c1e
--- /dev/null
+++ b/pkg/workflow/bash_timeout_test.go
@@ -0,0 +1,385 @@
+package workflow
+
+import (
+	"testing"
+)
+
+func TestBashToolTimeout(t *testing.T) {
+	engine := NewClaudeEngine()
+
+	tests := []struct {
+		name     string
+		tools    map[string]any
+		expected string
+	}{
+		{
+			name: "bash with timeout only",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout": 30,
+				},
+			},
+			expected: "Bash,BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite",
+		},
+		{
+			name: "bash with timeout and commands",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout":  60,
+					"commands": []any{"echo", "ls"},
+				},
+			},
+			expected: "Bash(echo),Bash(ls),BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite",
+		},
+		{
+			name: "bash with timeout and allowed field for commands",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout": 45,
+					"allowed": []any{"git", "npm"},
+				},
+			},
+			expected: "Bash(git),Bash(npm),BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite",
+		},
+		{
+			name: "bash with commands field should override allowed field",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout":  30,
+					"commands": []any{"echo"},
+					"allowed":  []any{"git"},
+				},
+			},
+			expected: "Bash(echo),BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite",
+		},
+		{
+			name: "bash with string timeout should work",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout": "90",
+				},
+			},
+			expected: "Bash,BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite",
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			result := engine.computeAllowedClaudeToolsString(tt.tools, nil)
+			if result != tt.expected {
+				t.Errorf("Expected %s, got %s", tt.expected, result)
+			}
+		})
+	}
+}
+
+func TestExpandNeutralToolsWithBashTimeout(t *testing.T) {
+	engine := NewClaudeEngine()
+
+	tests := []struct {
+		name     string
+		input    map[string]any
+		expected map[string]any
+	}{
+		{
+			name: "bash tool with timeout only",
+			input: map[string]any{
+				"bash": map[string]any{
+					"timeout": 30,
+				},
+			},
+			expected: map[string]any{
+				"claude": map[string]any{
+					"allowed": map[string]any{
+						"Bash": nil, // All commands allowed when no commands specified
+					},
+					"timeout": map[string]any{
+						"bash": 30,
+					},
+				},
+			},
+		},
+		{
+			name: "bash tool with timeout and commands",
+			input: map[string]any{
+				"bash": map[string]any{
+					"timeout":  60,
+					"commands": []any{"echo", "ls"},
+				},
+			},
+			expected: map[string]any{
+				"claude": map[string]any{
+					"allowed": map[string]any{
+						"Bash": []any{"echo", "ls"},
+					},
+					"timeout": map[string]any{
+						"bash": 60,
+					},
+				},
+			},
+		},
+		{
+			name: "mixed tools with bash timeout",
+			input: map[string]any{
+				"bash": map[string]any{
+					"timeout": 45,
+					"allowed": []any{"git"},
+				},
+				"web-fetch": nil,
+			},
+			expected: map[string]any{
+				"claude": map[string]any{
+					"allowed": map[string]any{
+						"Bash":     []any{"git"},
+						"WebFetch": nil,
+					},
+					"timeout": map[string]any{
+						"bash": 45,
+					},
+				},
+			},
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			result := engine.expandNeutralToolsToClaudeTools(tt.input)
+
+			// Check claude section
+			claudeResult, hasClaudeResult := result["claude"]
+			claudeExpected, hasClaudeExpected := tt.expected["claude"]
+
+			if hasClaudeExpected != hasClaudeResult {
+				t.Errorf("Claude section presence mismatch. Expected: %v, Got: %v", hasClaudeExpected, hasClaudeResult)
+				return
+			}
+
+			if hasClaudeExpected {
+				claudeResultMap, ok1 := claudeResult.(map[string]any)
+				claudeExpectedMap, ok2 := claudeExpected.(map[string]any)
+
+				if !ok1 || !ok2 {
+					t.Errorf("Claude section type mismatch")
+					return
+				}
+
+				// Check allowed section
+				_, hasAllowedResult := claudeResultMap["allowed"]
+				_, hasAllowedExpected := claudeExpectedMap["allowed"]
+
+				if hasAllowedExpected != hasAllowedResult {
+					t.Errorf("Claude allowed section presence mismatch. Expected: %v, Got: %v", hasAllowedExpected, hasAllowedResult)
+					return
+				}
+
+				// Check timeout section
+				timeoutResult, hasTimeoutResult := claudeResultMap["timeout"]
+				timeoutExpected, hasTimeoutExpected := claudeExpectedMap["timeout"]
+
+				if hasTimeoutExpected != hasTimeoutResult {
+					t.Errorf("Claude timeout section presence mismatch. Expected: %v, Got: %v", hasTimeoutExpected, hasTimeoutResult)
+					return
+				}
+
+				if hasTimeoutExpected {
+					timeoutResultMap, ok1 := timeoutResult.(map[string]any)
+					timeoutExpectedMap, ok2 := timeoutExpected.(map[string]any)
+
+					if !ok1 || !ok2 {
+						t.Errorf("Claude timeout section type mismatch")
+						return
+					}
+
+					// Check bash timeout value
+					bashTimeoutResult, hasBashTimeoutResult := timeoutResultMap["bash"]
+					bashTimeoutExpected, hasBashTimeoutExpected := timeoutExpectedMap["bash"]
+
+					if hasBashTimeoutExpected != hasBashTimeoutResult {
+						t.Errorf("Bash timeout presence mismatch. Expected: %v, Got: %v", hasBashTimeoutExpected, hasBashTimeoutResult)
+						return
+					}
+
+					if hasBashTimeoutExpected && bashTimeoutResult != bashTimeoutExpected {
+						t.Errorf("Bash timeout value mismatch. Expected: %v, Got: %v", bashTimeoutExpected, bashTimeoutResult)
+					}
+				}
+			}
+		})
+	}
+}
+
+func TestExtractBashTimeoutEnvVars(t *testing.T) {
+	engine := NewClaudeEngine()
+
+	tests := []struct {
+		name     string
+		tools    map[string]any
+		expected map[string]string
+	}{
+		{
+			name:     "no tools",
+			tools:    nil,
+			expected: map[string]string{},
+		},
+		{
+			name: "bash tool without timeout",
+			tools: map[string]any{
+				"bash": []any{"echo"},
+			},
+			expected: map[string]string{},
+		},
+		{
+			name: "bash tool with integer timeout",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout": 30,
+				},
+			},
+			expected: map[string]string{
+				"BASH_DEFAULT_TIMEOUT_MS": "30000",
+				"BASH_MAX_TIMEOUT_MS":     "30000",
+			},
+		},
+		{
+			name: "bash tool with float timeout",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout": 45.5,
+				},
+			},
+			expected: map[string]string{
+				"BASH_DEFAULT_TIMEOUT_MS": "45500",
+				"BASH_MAX_TIMEOUT_MS":     "45500",
+			},
+		},
+		{
+			name: "bash tool with string timeout",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout": "60",
+				},
+			},
+			expected: map[string]string{
+				"BASH_DEFAULT_TIMEOUT_MS": "60000",
+				"BASH_MAX_TIMEOUT_MS":     "60000",
+			},
+		},
+		{
+			name: "bash tool with pre-millisecond timeout string",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout": "120000",
+				},
+			},
+			expected: map[string]string{
+				"BASH_DEFAULT_TIMEOUT_MS": "120000000",
+				"BASH_MAX_TIMEOUT_MS":     "120000000",
+			},
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			result := engine.extractBashTimeoutEnvVars(tt.tools)
+			
+			if len(result) != len(tt.expected) {
+				t.Errorf("Expected %d env vars, got %d. Expected: %+v, Got: %+v", len(tt.expected), len(result), tt.expected, result)
+				return
+			}
+			
+			for expectedKey, expectedValue := range tt.expected {
+				if actualValue, exists := result[expectedKey]; !exists {
+					t.Errorf("Expected env var %s not found", expectedKey)
+				} else if actualValue != expectedValue {
+					t.Errorf("Expected %s=%s, got %s=%s", expectedKey, expectedValue, expectedKey, actualValue)
+				}
+			}
+		})
+	}
+}
+
+func TestValidateBashTimeoutSupport(t *testing.T) {
+tests := []struct {
+name        string
+engineID    string
+tools       map[string]any
+expectError bool
+errorMsg    string
+}{
+{
+name:     "claude engine with bash timeout should pass",
+engineID: "claude",
+tools: map[string]any{
+"bash": map[string]any{
+"timeout": 30,
+},
+},
+expectError: false,
+},
+{
+name:     "codex engine without bash timeout should pass",
+engineID: "codex",
+tools: map[string]any{
+"bash": []any{"echo"},
+},
+expectError: false,
+},
+{
+name:     "codex engine with bash timeout should fail",
+engineID: "codex",
+tools: map[string]any{
+"bash": map[string]any{
+"timeout": 30,
+},
+},
+expectError: true,
+errorMsg:    "bash tool timeout configuration is not supported by engine 'codex'",
+},
+{
+name:     "custom engine with bash timeout should fail",
+engineID: "custom",
+tools: map[string]any{
+"bash": map[string]any{
+"timeout":  45,
+"commands": []any{"echo"},
+},
+},
+expectError: true,
+errorMsg:    "bash tool timeout configuration is not supported by engine 'custom'",
+},
+{
+name:     "no bash tool should pass for any engine",
+engineID: "codex",
+tools: map[string]any{
+"web-fetch": nil,
+},
+expectError: false,
+},
+}
+
+compiler := NewCompiler(false, "", "test")
+engines := NewEngineRegistry()
+
+for _, tt := range tests {
+t.Run(tt.name, func(t *testing.T) {
+engine, err := engines.GetEngine(tt.engineID)
+if err != nil {
+t.Fatalf("Engine %s not found: %v", tt.engineID, err)
+}
+
+err = compiler.validateBashTimeoutSupport(tt.tools, engine)
+
+if tt.expectError {
+if err == nil {
+t.Errorf("Expected error but got none")
+} else if err.Error() != tt.errorMsg {
+t.Errorf("Expected error message \"%s\", got \"%s\"", tt.errorMsg, err.Error())
+}
+} else {
+if err != nil {
+t.Errorf("Expected no error but got: %v", err)
+}
+}
+})
+}
+}
diff --git a/pkg/workflow/claude_engine.go b/pkg/workflow/claude_engine.go
index b00d349b04d..72d06773a0b 100644
--- a/pkg/workflow/claude_engine.go
+++ b/pkg/workflow/claude_engine.go
@@ -5,6 +5,7 @@ import (
 	"fmt"
 	"slices"
 	"sort"
+	"strconv"
 	"strings"
 	"time"
 )
@@ -27,8 +28,9 @@ func NewClaudeEngine() *ClaudeEngine {
 			description:            "Uses Claude Code with full MCP tool support and allow-listing",
 			experimental:           false,
 			supportsToolsWhitelist: true,
-			supportsHTTPTransport:  true, // Claude supports both stdio and HTTP transport
-			supportsMaxTurns:       true, // Claude supports max-turns feature
+			supportsHTTPTransport:  true,  // Claude supports both stdio and HTTP transport
+			supportsMaxTurns:       true,  // Claude supports max-turns feature
+			supportsBashTimeout:    true,  // Claude supports bash timeout configuration
 		},
 	}
 }
@@ -100,6 +102,15 @@ func (e *ClaudeEngine) GetExecutionSteps(workflowData *WorkflowData, logFile str
 		}
 	}
 
+	// Add bash timeout environment variables from tools configuration
+	bashTimeoutEnvVars := e.extractBashTimeoutEnvVars(workflowData.Tools)
+	for key, value := range bashTimeoutEnvVars {
+		if claudeEnv != "" {
+			claudeEnv += "\n"
+		}
+		claudeEnv += "            " + key + ": " + value
+	}
+
 	inputs := map[string]string{
 		"prompt_file":       "/tmp/aw-prompts/prompt.txt",
 		"anthropic_api_key": "${{ secrets.ANTHROPIC_API_KEY }}",
@@ -268,12 +279,44 @@ func (e *ClaudeEngine) expandNeutralToolsToClaudeTools(tools map[string]any) map
 		claudeAllowed = make(map[string]any)
 	}
 
+	// Get existing timeout section from Claude section
+	var claudeTimeout map[string]any
+	if timeout, hasTimeout := claudeSection["timeout"]; hasTimeout {
+		if timeoutMap, ok := timeout.(map[string]any); ok {
+			claudeTimeout = timeoutMap
+		} else {
+			claudeTimeout = make(map[string]any)
+		}
+	} else {
+		claudeTimeout = make(map[string]any)
+	}
+
 	// Convert neutral tools to Claude tools
 	if bashTool, hasBash := tools["bash"]; hasBash {
 		// bash -> Bash, KillBash, BashOutput
-		if bashCommands, ok := bashTool.([]any); ok {
+		if bashConfig, ok := bashTool.(map[string]any); ok {
+			// Handle object format with timeout and commands
+			var commands any = nil
+			
+			// Check for commands in "commands" field (preferred)
+			if cmdArray, hasCommands := bashConfig["commands"]; hasCommands {
+				commands = cmdArray
+			} else if allowedArray, hasAllowed := bashConfig["allowed"]; hasAllowed {
+				// Fallback to "allowed" field for backward compatibility
+				commands = allowedArray
+			}
+			
+			claudeAllowed["Bash"] = commands
+			
+			// Extract timeout if present
+			if timeout, hasTimeout := bashConfig["timeout"]; hasTimeout {
+				claudeTimeout["bash"] = timeout
+			}
+		} else if bashCommands, ok := bashTool.([]any); ok {
+			// Handle array format (existing behavior)
 			claudeAllowed["Bash"] = bashCommands
 		} else {
+			// Handle nil or other format (existing behavior)
 			claudeAllowed["Bash"] = nil // Allow all bash commands
 		}
 	}
@@ -302,11 +345,57 @@ func (e *ClaudeEngine) expandNeutralToolsToClaudeTools(tools map[string]any) map
 
 	// Update claude section
 	claudeSection["allowed"] = claudeAllowed
+	
+	// Only add timeout section if we have timeout configurations
+	if len(claudeTimeout) > 0 {
+		claudeSection["timeout"] = claudeTimeout
+	}
+	
 	result["claude"] = claudeSection
 
 	return result
 }
 
+// extractBashTimeoutEnvVars extracts bash timeout configuration and returns environment variables for the Claude agent
+func (e *ClaudeEngine) extractBashTimeoutEnvVars(tools map[string]any) map[string]string {
+	envVars := make(map[string]string)
+	
+	if tools == nil {
+		return envVars
+	}
+	
+	if bashTool, hasBash := tools["bash"]; hasBash {
+		if bashConfig, ok := bashTool.(map[string]any); ok {
+			if timeout, hasTimeout := bashConfig["timeout"]; hasTimeout {
+				// Convert timeout to milliseconds for BASH_DEFAULT_TIMEOUT_MS
+				timeoutMs := ""
+				switch t := timeout.(type) {
+				case int:
+					timeoutMs = fmt.Sprintf("%d", t*1000)
+				case float64:
+					timeoutMs = fmt.Sprintf("%.0f", t*1000)
+				case string:
+					// Try to parse as number
+					if timeoutVal, err := strconv.Atoi(t); err == nil {
+						timeoutMs = fmt.Sprintf("%d", timeoutVal*1000)
+					} else {
+						// If parsing fails, assume it's already in the correct format
+						timeoutMs = t
+					}
+				}
+				
+				if timeoutMs != "" {
+					// Set the bash timeout environment variables
+					envVars["BASH_DEFAULT_TIMEOUT_MS"] = timeoutMs
+					envVars["BASH_MAX_TIMEOUT_MS"] = timeoutMs // Use the same value for max timeout
+				}
+			}
+		}
+	}
+	
+	return envVars
+}
+
 // computeAllowedClaudeToolsString
 // 1. validates that only neutral tools are provided (no claude section)
 // 2. converts neutral tools to Claude-specific tools format
diff --git a/pkg/workflow/codex_engine.go b/pkg/workflow/codex_engine.go
index e4da6afe816..f139516b56b 100644
--- a/pkg/workflow/codex_engine.go
+++ b/pkg/workflow/codex_engine.go
@@ -24,6 +24,7 @@ func NewCodexEngine() *CodexEngine {
 			supportsToolsWhitelist: true,
 			supportsHTTPTransport:  false, // Codex only supports stdio transport
 			supportsMaxTurns:       false, // Codex does not support max-turns feature
+			supportsBashTimeout:    false, // Codex does not support bash timeout configuration
 		},
 	}
 }
diff --git a/pkg/workflow/compiler.go b/pkg/workflow/compiler.go
index 55b560de8f4..381aa8ed77c 100644
--- a/pkg/workflow/compiler.go
+++ b/pkg/workflow/compiler.go
@@ -581,6 +581,11 @@ func (c *Compiler) parseWorkflowFile(markdownPath string) (*WorkflowData, error)
 		return nil, fmt.Errorf("HTTP transport not supported: %w", err)
 	}
 
+	// Validate bash timeout support for the current engine
+	if err := c.validateBashTimeoutSupport(tools, agenticEngine); err != nil {
+		return nil, fmt.Errorf("bash timeout not supported: %w", err)
+	}
+
 	if !agenticEngine.SupportsToolsWhitelist() {
 		// For engines that don't support tool whitelists (like codex), ignore tools section and provide warnings
 		fmt.Println(console.FormatWarningMessage(fmt.Sprintf("Using experimental %s support (engine: %s)", agenticEngine.GetDisplayName(), engineSetting)))
@@ -4139,6 +4144,25 @@ func (c *Compiler) validateHTTPTransportSupport(tools map[string]any, engine Cod
 	return nil
 }
 
+// validateBashTimeoutSupport validates that bash timeout configuration is only used with engines that support it
+func (c *Compiler) validateBashTimeoutSupport(tools map[string]any, engine CodingAgentEngine) error {
+	if engine.SupportsBashTimeout() {
+		// Engine supports bash timeout, no validation needed
+		return nil
+	}
+
+	// Engine doesn't support bash timeout, check for bash timeout configuration
+	if bashTool, hasBash := tools["bash"]; hasBash {
+		if bashConfig, ok := bashTool.(map[string]any); ok {
+			if _, hasTimeout := bashConfig["timeout"]; hasTimeout {
+				return fmt.Errorf("bash tool timeout configuration is not supported by engine '%s'", engine.GetID())
+			}
+		}
+	}
+
+	return nil
+}
+
 // validateMaxTurnsSupport validates that max-turns is only used with engines that support this feature
 func (c *Compiler) validateMaxTurnsSupport(frontmatter map[string]any, engine CodingAgentEngine) error {
 	// Check if max-turns is specified in the engine config
diff --git a/pkg/workflow/custom_engine.go b/pkg/workflow/custom_engine.go
index 96979067443..5d73daab811 100644
--- a/pkg/workflow/custom_engine.go
+++ b/pkg/workflow/custom_engine.go
@@ -20,7 +20,8 @@ func NewCustomEngine() *CustomEngine {
 			experimental:           false,
 			supportsToolsWhitelist: false,
 			supportsHTTPTransport:  false,
-			supportsMaxTurns:       true, // Custom engine supports max-turns for consistency
+			supportsMaxTurns:       true,  // Custom engine supports max-turns for consistency
+			supportsBashTimeout:    false, // Custom engine does not support bash timeout configuration
 		},
 	}
 }

From 09203b57e83ddaedc2bdd68e1b8ece547edb2487 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 10 Sep 2025 14:15:12 +0000
Subject: [PATCH 3/7] Changes before error encountered

Co-authored-by: pelikhan <4175913+pelikhan@users.noreply.github.com>
---
 pkg/workflow/claude_engine.go | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/pkg/workflow/claude_engine.go b/pkg/workflow/claude_engine.go
index 72d06773a0b..18223419abe 100644
--- a/pkg/workflow/claude_engine.go
+++ b/pkg/workflow/claude_engine.go
@@ -104,6 +104,8 @@ func (e *ClaudeEngine) GetExecutionSteps(workflowData *WorkflowData, logFile str
 
 	// Add bash timeout environment variables from tools configuration
 	bashTimeoutEnvVars := e.extractBashTimeoutEnvVars(workflowData.Tools)
+	fmt.Printf("DEBUG: workflowData.Tools: %+v\n", workflowData.Tools)
+	fmt.Printf("DEBUG: bashTimeoutEnvVars: %+v\n", bashTimeoutEnvVars)
 	for key, value := range bashTimeoutEnvVars {
 		if claudeEnv != "" {
 			claudeEnv += "\n"
@@ -361,12 +363,16 @@ func (e *ClaudeEngine) extractBashTimeoutEnvVars(tools map[string]any) map[strin
 	envVars := make(map[string]string)
 	
 	if tools == nil {
+		fmt.Printf("DEBUG: tools is nil\n")
 		return envVars
 	}
 	
 	if bashTool, hasBash := tools["bash"]; hasBash {
+		fmt.Printf("DEBUG: Found bash tool: %+v (type: %T)\n", bashTool, bashTool)
 		if bashConfig, ok := bashTool.(map[string]any); ok {
+			fmt.Printf("DEBUG: bash tool is map: %+v\n", bashConfig)
 			if timeout, hasTimeout := bashConfig["timeout"]; hasTimeout {
+				fmt.Printf("DEBUG: Found timeout: %+v (type: %T)\n", timeout, timeout)
 				// Convert timeout to milliseconds for BASH_DEFAULT_TIMEOUT_MS
 				timeoutMs := ""
 				switch t := timeout.(type) {
@@ -385,12 +391,19 @@ func (e *ClaudeEngine) extractBashTimeoutEnvVars(tools map[string]any) map[strin
 				}
 				
 				if timeoutMs != "" {
+					fmt.Printf("DEBUG: Setting timeout env vars: %s\n", timeoutMs)
 					// Set the bash timeout environment variables
 					envVars["BASH_DEFAULT_TIMEOUT_MS"] = timeoutMs
 					envVars["BASH_MAX_TIMEOUT_MS"] = timeoutMs // Use the same value for max timeout
 				}
+			} else {
+				fmt.Printf("DEBUG: No timeout in bash config\n")
 			}
+		} else {
+			fmt.Printf("DEBUG: bash tool is not a map\n")
 		}
+	} else {
+		fmt.Printf("DEBUG: No bash tool found\n")
 	}
 	
 	return envVars

From f2227a2be1dd0c3adcf24171df89780d96d01a17 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 10 Sep 2025 21:32:20 +0000
Subject: [PATCH 4/7] Remove debug statements from Go code and JavaScript
 workflows

- Remove multiple fmt.Printf("DEBUG: ...") statements from claude_engine.go
- Remove console.log debug statement from collect_ndjson_output.cjs
- Recompile all workflow .lock.yml files to apply changes
- Fix linting issue with variable declaration
- Ensure all tests pass and validation succeeds

Co-authored-by: pelikhan <4175913+pelikhan@users.noreply.github.com>
---
 .../test-ai-inference-github-models.lock.yml  |   3 +-
 .../test-claude-add-issue-comment.lock.yml    |   3 +-
 .../test-claude-add-issue-labels.lock.yml     |   3 +-
 .../workflows/test-claude-command.lock.yml    |   3 +-
 .../test-claude-create-issue.lock.yml         |   3 +-
 ...reate-pull-request-review-comment.lock.yml |   3 +-
 .../test-claude-create-pull-request.lock.yml  |   3 +-
 ...eate-repository-security-advisory.lock.yml |  18 +-
 .github/workflows/test-claude-mcp.lock.yml    |   3 +-
 .../test-claude-push-to-branch.lock.yml       |   3 +-
 .../test-claude-update-issue.lock.yml         |   3 +-
 .../test-codex-add-issue-comment.lock.yml     |   3 +-
 .../test-codex-add-issue-labels.lock.yml      |   3 +-
 .github/workflows/test-codex-command.lock.yml |   3 +-
 .../test-codex-create-issue.lock.yml          |   3 +-
 ...reate-pull-request-review-comment.lock.yml |   3 +-
 .../test-codex-create-pull-request.lock.yml   |   3 +-
 ...eate-repository-security-advisory.lock.yml |  18 +-
 .github/workflows/test-codex-mcp.lock.yml     |   3 +-
 .../test-codex-push-to-branch.lock.yml        |   3 +-
 .../test-codex-update-issue.lock.yml          |   3 +-
 .../test-custom-safe-outputs.lock.yml         |  18 +-
 .github/workflows/test-proxy.lock.yml         |   3 +-
 pkg/workflow/bash_timeout_test.go             | 162 +++++++++---------
 pkg/workflow/claude_engine.go                 |  39 ++---
 pkg/workflow/js/collect_ndjson_output.cjs     |   3 +-
 .../js/collect_ndjson_output.test.cjs         |   4 +-
 .../create_repository_security_advisory.cjs   |  15 +-
 ...eate_repository_security_advisory.test.cjs |  50 ++++--
 29 files changed, 204 insertions(+), 183 deletions(-)

diff --git a/.github/workflows/test-ai-inference-github-models.lock.yml b/.github/workflows/test-ai-inference-github-models.lock.yml
index ac23d5291b3..f3c785ff36c 100644
--- a/.github/workflows/test-ai-inference-github-models.lock.yml
+++ b/.github/workflows/test-ai-inference-github-models.lock.yml
@@ -698,7 +698,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -772,7 +772,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-add-issue-comment.lock.yml b/.github/workflows/test-claude-add-issue-comment.lock.yml
index 95e9d4bcb7a..a7084328cb6 100644
--- a/.github/workflows/test-claude-add-issue-comment.lock.yml
+++ b/.github/workflows/test-claude-add-issue-comment.lock.yml
@@ -885,7 +885,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -959,7 +959,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-add-issue-labels.lock.yml b/.github/workflows/test-claude-add-issue-labels.lock.yml
index f8b65fdf872..4fb4ad59bda 100644
--- a/.github/workflows/test-claude-add-issue-labels.lock.yml
+++ b/.github/workflows/test-claude-add-issue-labels.lock.yml
@@ -885,7 +885,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -959,7 +959,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-command.lock.yml b/.github/workflows/test-claude-command.lock.yml
index f7924c7c455..b5603e73481 100644
--- a/.github/workflows/test-claude-command.lock.yml
+++ b/.github/workflows/test-claude-command.lock.yml
@@ -1058,7 +1058,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -1132,7 +1132,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-create-issue.lock.yml b/.github/workflows/test-claude-create-issue.lock.yml
index 0fbdf6ab4d1..155490a980c 100644
--- a/.github/workflows/test-claude-create-issue.lock.yml
+++ b/.github/workflows/test-claude-create-issue.lock.yml
@@ -558,7 +558,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -632,7 +632,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-create-pull-request-review-comment.lock.yml b/.github/workflows/test-claude-create-pull-request-review-comment.lock.yml
index 49a801abf1b..17f38a48cc8 100644
--- a/.github/workflows/test-claude-create-pull-request-review-comment.lock.yml
+++ b/.github/workflows/test-claude-create-pull-request-review-comment.lock.yml
@@ -831,7 +831,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -905,7 +905,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-create-pull-request.lock.yml b/.github/workflows/test-claude-create-pull-request.lock.yml
index cde7307289c..8c396904912 100644
--- a/.github/workflows/test-claude-create-pull-request.lock.yml
+++ b/.github/workflows/test-claude-create-pull-request.lock.yml
@@ -634,7 +634,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -708,7 +708,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-create-repository-security-advisory.lock.yml b/.github/workflows/test-claude-create-repository-security-advisory.lock.yml
index c3e6b5f5681..d7bf89c7ee5 100644
--- a/.github/workflows/test-claude-create-repository-security-advisory.lock.yml
+++ b/.github/workflows/test-claude-create-repository-security-advisory.lock.yml
@@ -820,7 +820,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -894,7 +894,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
@@ -1741,13 +1740,18 @@ jobs:
               }
               // Find all create-repository-security-advisory items
               const securityItems = validatedOutput.items.filter(
-                /** @param {any} item */ item => item.type === "create-repository-security-advisory"
+                /** @param {any} item */ item =>
+                  item.type === "create-repository-security-advisory"
               );
               if (securityItems.length === 0) {
-                console.log("No create-repository-security-advisory items found in agent output");
+                console.log(
+                  "No create-repository-security-advisory items found in agent output"
+                );
                 return;
               }
-              console.log(`Found ${securityItems.length} create-repository-security-advisory item(s)`);
+              console.log(
+                `Found ${securityItems.length} create-repository-security-advisory item(s)`
+              );
               // Get the max configuration from environment variable
               const maxFindings = process.env.GITHUB_AW_SECURITY_REPORT_MAX
                 ? parseInt(process.env.GITHUB_AW_SECURITY_REPORT_MAX)
@@ -1782,7 +1786,9 @@ jobs:
                 );
                 // Validate required fields
                 if (!securityItem.file) {
-                  console.log('Missing required field "file" in repository security advisory item');
+                  console.log(
+                    'Missing required field "file" in repository security advisory item'
+                  );
                   continue;
                 }
                 if (
diff --git a/.github/workflows/test-claude-mcp.lock.yml b/.github/workflows/test-claude-mcp.lock.yml
index 79fc4531d15..21f820d13b8 100644
--- a/.github/workflows/test-claude-mcp.lock.yml
+++ b/.github/workflows/test-claude-mcp.lock.yml
@@ -840,7 +840,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -914,7 +914,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-push-to-branch.lock.yml b/.github/workflows/test-claude-push-to-branch.lock.yml
index a88e3825f70..54d507bff1f 100644
--- a/.github/workflows/test-claude-push-to-branch.lock.yml
+++ b/.github/workflows/test-claude-push-to-branch.lock.yml
@@ -727,7 +727,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -801,7 +801,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-update-issue.lock.yml b/.github/workflows/test-claude-update-issue.lock.yml
index 5191edd64b7..d4005a3cd57 100644
--- a/.github/workflows/test-claude-update-issue.lock.yml
+++ b/.github/workflows/test-claude-update-issue.lock.yml
@@ -888,7 +888,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -962,7 +962,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-add-issue-comment.lock.yml b/.github/workflows/test-codex-add-issue-comment.lock.yml
index 34deb864dc3..89f72388af3 100644
--- a/.github/workflows/test-codex-add-issue-comment.lock.yml
+++ b/.github/workflows/test-codex-add-issue-comment.lock.yml
@@ -716,7 +716,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -790,7 +790,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-add-issue-labels.lock.yml b/.github/workflows/test-codex-add-issue-labels.lock.yml
index 9c2b8c78acf..e82ba0011b9 100644
--- a/.github/workflows/test-codex-add-issue-labels.lock.yml
+++ b/.github/workflows/test-codex-add-issue-labels.lock.yml
@@ -716,7 +716,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -790,7 +790,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-command.lock.yml b/.github/workflows/test-codex-command.lock.yml
index 174bd80d932..44936597dab 100644
--- a/.github/workflows/test-codex-command.lock.yml
+++ b/.github/workflows/test-codex-command.lock.yml
@@ -1058,7 +1058,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -1132,7 +1132,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-create-issue.lock.yml b/.github/workflows/test-codex-create-issue.lock.yml
index e4753ca11a9..f012ff8d495 100644
--- a/.github/workflows/test-codex-create-issue.lock.yml
+++ b/.github/workflows/test-codex-create-issue.lock.yml
@@ -389,7 +389,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -463,7 +463,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-create-pull-request-review-comment.lock.yml b/.github/workflows/test-codex-create-pull-request-review-comment.lock.yml
index 663593f9520..934f3c1ab0d 100644
--- a/.github/workflows/test-codex-create-pull-request-review-comment.lock.yml
+++ b/.github/workflows/test-codex-create-pull-request-review-comment.lock.yml
@@ -662,7 +662,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -736,7 +736,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-create-pull-request.lock.yml b/.github/workflows/test-codex-create-pull-request.lock.yml
index 23038b6b589..fcce878aa2f 100644
--- a/.github/workflows/test-codex-create-pull-request.lock.yml
+++ b/.github/workflows/test-codex-create-pull-request.lock.yml
@@ -455,7 +455,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -529,7 +529,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-create-repository-security-advisory.lock.yml b/.github/workflows/test-codex-create-repository-security-advisory.lock.yml
index 78c13da76c8..14ce16fa3cc 100644
--- a/.github/workflows/test-codex-create-repository-security-advisory.lock.yml
+++ b/.github/workflows/test-codex-create-repository-security-advisory.lock.yml
@@ -651,7 +651,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -725,7 +725,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
@@ -1502,13 +1501,18 @@ jobs:
               }
               // Find all create-repository-security-advisory items
               const securityItems = validatedOutput.items.filter(
-                /** @param {any} item */ item => item.type === "create-repository-security-advisory"
+                /** @param {any} item */ item =>
+                  item.type === "create-repository-security-advisory"
               );
               if (securityItems.length === 0) {
-                console.log("No create-repository-security-advisory items found in agent output");
+                console.log(
+                  "No create-repository-security-advisory items found in agent output"
+                );
                 return;
               }
-              console.log(`Found ${securityItems.length} create-repository-security-advisory item(s)`);
+              console.log(
+                `Found ${securityItems.length} create-repository-security-advisory item(s)`
+              );
               // Get the max configuration from environment variable
               const maxFindings = process.env.GITHUB_AW_SECURITY_REPORT_MAX
                 ? parseInt(process.env.GITHUB_AW_SECURITY_REPORT_MAX)
@@ -1543,7 +1547,9 @@ jobs:
                 );
                 // Validate required fields
                 if (!securityItem.file) {
-                  console.log('Missing required field "file" in repository security advisory item');
+                  console.log(
+                    'Missing required field "file" in repository security advisory item'
+                  );
                   continue;
                 }
                 if (
diff --git a/.github/workflows/test-codex-mcp.lock.yml b/.github/workflows/test-codex-mcp.lock.yml
index 91fa57b1a8d..de45ffbc591 100644
--- a/.github/workflows/test-codex-mcp.lock.yml
+++ b/.github/workflows/test-codex-mcp.lock.yml
@@ -668,7 +668,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -742,7 +742,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-push-to-branch.lock.yml b/.github/workflows/test-codex-push-to-branch.lock.yml
index dae46027499..be9e303b559 100644
--- a/.github/workflows/test-codex-push-to-branch.lock.yml
+++ b/.github/workflows/test-codex-push-to-branch.lock.yml
@@ -586,7 +586,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -660,7 +660,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-update-issue.lock.yml b/.github/workflows/test-codex-update-issue.lock.yml
index 8ebb40d8693..e0fd5cf5adf 100644
--- a/.github/workflows/test-codex-update-issue.lock.yml
+++ b/.github/workflows/test-codex-update-issue.lock.yml
@@ -719,7 +719,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -793,7 +793,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-custom-safe-outputs.lock.yml b/.github/workflows/test-custom-safe-outputs.lock.yml
index 9e40737666b..35b72eac0b6 100644
--- a/.github/workflows/test-custom-safe-outputs.lock.yml
+++ b/.github/workflows/test-custom-safe-outputs.lock.yml
@@ -571,7 +571,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -645,7 +645,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
@@ -2143,13 +2142,18 @@ jobs:
               }
               // Find all create-repository-security-advisory items
               const securityItems = validatedOutput.items.filter(
-                /** @param {any} item */ item => item.type === "create-repository-security-advisory"
+                /** @param {any} item */ item =>
+                  item.type === "create-repository-security-advisory"
               );
               if (securityItems.length === 0) {
-                console.log("No create-repository-security-advisory items found in agent output");
+                console.log(
+                  "No create-repository-security-advisory items found in agent output"
+                );
                 return;
               }
-              console.log(`Found ${securityItems.length} create-repository-security-advisory item(s)`);
+              console.log(
+                `Found ${securityItems.length} create-repository-security-advisory item(s)`
+              );
               // Get the max configuration from environment variable
               const maxFindings = process.env.GITHUB_AW_SECURITY_REPORT_MAX
                 ? parseInt(process.env.GITHUB_AW_SECURITY_REPORT_MAX)
@@ -2184,7 +2188,9 @@ jobs:
                 );
                 // Validate required fields
                 if (!securityItem.file) {
-                  console.log('Missing required field "file" in repository security advisory item');
+                  console.log(
+                    'Missing required field "file" in repository security advisory item'
+                  );
                   continue;
                 }
                 if (
diff --git a/.github/workflows/test-proxy.lock.yml b/.github/workflows/test-proxy.lock.yml
index 1d7bec7fee8..b90883d9d97 100644
--- a/.github/workflows/test-proxy.lock.yml
+++ b/.github/workflows/test-proxy.lock.yml
@@ -801,7 +801,7 @@ jobs:
                 // U+0014 (DC4) — represented here as "\u0014"
                 // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
                 // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-                const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+                const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
                 repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
                   const c = ch.charCodeAt(0);
                   return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -875,7 +875,6 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
-                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/pkg/workflow/bash_timeout_test.go b/pkg/workflow/bash_timeout_test.go
index 100d61b1c1e..539cabb0821 100644
--- a/pkg/workflow/bash_timeout_test.go
+++ b/pkg/workflow/bash_timeout_test.go
@@ -281,12 +281,12 @@ func TestExtractBashTimeoutEnvVars(t *testing.T) {
 	for _, tt := range tests {
 		t.Run(tt.name, func(t *testing.T) {
 			result := engine.extractBashTimeoutEnvVars(tt.tools)
-			
+
 			if len(result) != len(tt.expected) {
 				t.Errorf("Expected %d env vars, got %d. Expected: %+v, Got: %+v", len(tt.expected), len(result), tt.expected, result)
 				return
 			}
-			
+
 			for expectedKey, expectedValue := range tt.expected {
 				if actualValue, exists := result[expectedKey]; !exists {
 					t.Errorf("Expected env var %s not found", expectedKey)
@@ -299,87 +299,87 @@ func TestExtractBashTimeoutEnvVars(t *testing.T) {
 }
 
 func TestValidateBashTimeoutSupport(t *testing.T) {
-tests := []struct {
-name        string
-engineID    string
-tools       map[string]any
-expectError bool
-errorMsg    string
-}{
-{
-name:     "claude engine with bash timeout should pass",
-engineID: "claude",
-tools: map[string]any{
-"bash": map[string]any{
-"timeout": 30,
-},
-},
-expectError: false,
-},
-{
-name:     "codex engine without bash timeout should pass",
-engineID: "codex",
-tools: map[string]any{
-"bash": []any{"echo"},
-},
-expectError: false,
-},
-{
-name:     "codex engine with bash timeout should fail",
-engineID: "codex",
-tools: map[string]any{
-"bash": map[string]any{
-"timeout": 30,
-},
-},
-expectError: true,
-errorMsg:    "bash tool timeout configuration is not supported by engine 'codex'",
-},
-{
-name:     "custom engine with bash timeout should fail",
-engineID: "custom",
-tools: map[string]any{
-"bash": map[string]any{
-"timeout":  45,
-"commands": []any{"echo"},
-},
-},
-expectError: true,
-errorMsg:    "bash tool timeout configuration is not supported by engine 'custom'",
-},
-{
-name:     "no bash tool should pass for any engine",
-engineID: "codex",
-tools: map[string]any{
-"web-fetch": nil,
-},
-expectError: false,
-},
-}
+	tests := []struct {
+		name        string
+		engineID    string
+		tools       map[string]any
+		expectError bool
+		errorMsg    string
+	}{
+		{
+			name:     "claude engine with bash timeout should pass",
+			engineID: "claude",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout": 30,
+				},
+			},
+			expectError: false,
+		},
+		{
+			name:     "codex engine without bash timeout should pass",
+			engineID: "codex",
+			tools: map[string]any{
+				"bash": []any{"echo"},
+			},
+			expectError: false,
+		},
+		{
+			name:     "codex engine with bash timeout should fail",
+			engineID: "codex",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout": 30,
+				},
+			},
+			expectError: true,
+			errorMsg:    "bash tool timeout configuration is not supported by engine 'codex'",
+		},
+		{
+			name:     "custom engine with bash timeout should fail",
+			engineID: "custom",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"timeout":  45,
+					"commands": []any{"echo"},
+				},
+			},
+			expectError: true,
+			errorMsg:    "bash tool timeout configuration is not supported by engine 'custom'",
+		},
+		{
+			name:     "no bash tool should pass for any engine",
+			engineID: "codex",
+			tools: map[string]any{
+				"web-fetch": nil,
+			},
+			expectError: false,
+		},
+	}
 
-compiler := NewCompiler(false, "", "test")
-engines := NewEngineRegistry()
+	compiler := NewCompiler(false, "", "test")
+	engines := NewEngineRegistry()
 
-for _, tt := range tests {
-t.Run(tt.name, func(t *testing.T) {
-engine, err := engines.GetEngine(tt.engineID)
-if err != nil {
-t.Fatalf("Engine %s not found: %v", tt.engineID, err)
-}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			engine, err := engines.GetEngine(tt.engineID)
+			if err != nil {
+				t.Fatalf("Engine %s not found: %v", tt.engineID, err)
+			}
 
-err = compiler.validateBashTimeoutSupport(tt.tools, engine)
+			err = compiler.validateBashTimeoutSupport(tt.tools, engine)
 
-if tt.expectError {
-if err == nil {
-t.Errorf("Expected error but got none")
-} else if err.Error() != tt.errorMsg {
-t.Errorf("Expected error message \"%s\", got \"%s\"", tt.errorMsg, err.Error())
-}
-} else {
-if err != nil {
-t.Errorf("Expected no error but got: %v", err)
-}
-}
-})
-}
+			if tt.expectError {
+				if err == nil {
+					t.Errorf("Expected error but got none")
+				} else if err.Error() != tt.errorMsg {
+					t.Errorf("Expected error message \"%s\", got \"%s\"", tt.errorMsg, err.Error())
+				}
+			} else {
+				if err != nil {
+					t.Errorf("Expected no error but got: %v", err)
+				}
+			}
+		})
+	}
 }
diff --git a/pkg/workflow/claude_engine.go b/pkg/workflow/claude_engine.go
index 7fc0abff0ee..102299c8689 100644
--- a/pkg/workflow/claude_engine.go
+++ b/pkg/workflow/claude_engine.go
@@ -28,9 +28,9 @@ func NewClaudeEngine() *ClaudeEngine {
 			description:            "Uses Claude Code with full MCP tool support and allow-listing",
 			experimental:           false,
 			supportsToolsWhitelist: true,
-			supportsHTTPTransport:  true,  // Claude supports both stdio and HTTP transport
-			supportsMaxTurns:       true,  // Claude supports max-turns feature
-			supportsBashTimeout:    true,  // Claude supports bash timeout configuration
+			supportsHTTPTransport:  true, // Claude supports both stdio and HTTP transport
+			supportsMaxTurns:       true, // Claude supports max-turns feature
+			supportsBashTimeout:    true, // Claude supports bash timeout configuration
 		},
 	}
 }
@@ -104,8 +104,6 @@ func (e *ClaudeEngine) GetExecutionSteps(workflowData *WorkflowData, logFile str
 
 	// Add bash timeout environment variables from tools configuration
 	bashTimeoutEnvVars := e.extractBashTimeoutEnvVars(workflowData.Tools)
-	fmt.Printf("DEBUG: workflowData.Tools: %+v\n", workflowData.Tools)
-	fmt.Printf("DEBUG: bashTimeoutEnvVars: %+v\n", bashTimeoutEnvVars)
 	for key, value := range bashTimeoutEnvVars {
 		if claudeEnv != "" {
 			claudeEnv += "\n"
@@ -298,8 +296,8 @@ func (e *ClaudeEngine) expandNeutralToolsToClaudeTools(tools map[string]any) map
 		// bash -> Bash, KillBash, BashOutput
 		if bashConfig, ok := bashTool.(map[string]any); ok {
 			// Handle object format with timeout and commands
-			var commands any = nil
-			
+			var commands any
+
 			// Check for commands in "commands" field (preferred)
 			if cmdArray, hasCommands := bashConfig["commands"]; hasCommands {
 				commands = cmdArray
@@ -307,9 +305,9 @@ func (e *ClaudeEngine) expandNeutralToolsToClaudeTools(tools map[string]any) map
 				// Fallback to "allowed" field for backward compatibility
 				commands = allowedArray
 			}
-			
+
 			claudeAllowed["Bash"] = commands
-			
+
 			// Extract timeout if present
 			if timeout, hasTimeout := bashConfig["timeout"]; hasTimeout {
 				claudeTimeout["bash"] = timeout
@@ -347,12 +345,12 @@ func (e *ClaudeEngine) expandNeutralToolsToClaudeTools(tools map[string]any) map
 
 	// Update claude section
 	claudeSection["allowed"] = claudeAllowed
-	
+
 	// Only add timeout section if we have timeout configurations
 	if len(claudeTimeout) > 0 {
 		claudeSection["timeout"] = claudeTimeout
 	}
-	
+
 	result["claude"] = claudeSection
 
 	return result
@@ -361,18 +359,14 @@ func (e *ClaudeEngine) expandNeutralToolsToClaudeTools(tools map[string]any) map
 // extractBashTimeoutEnvVars extracts bash timeout configuration and returns environment variables for the Claude agent
 func (e *ClaudeEngine) extractBashTimeoutEnvVars(tools map[string]any) map[string]string {
 	envVars := make(map[string]string)
-	
+
 	if tools == nil {
-		fmt.Printf("DEBUG: tools is nil\n")
 		return envVars
 	}
-	
+
 	if bashTool, hasBash := tools["bash"]; hasBash {
-		fmt.Printf("DEBUG: Found bash tool: %+v (type: %T)\n", bashTool, bashTool)
 		if bashConfig, ok := bashTool.(map[string]any); ok {
-			fmt.Printf("DEBUG: bash tool is map: %+v\n", bashConfig)
 			if timeout, hasTimeout := bashConfig["timeout"]; hasTimeout {
-				fmt.Printf("DEBUG: Found timeout: %+v (type: %T)\n", timeout, timeout)
 				// Convert timeout to milliseconds for BASH_DEFAULT_TIMEOUT_MS
 				timeoutMs := ""
 				switch t := timeout.(type) {
@@ -389,23 +383,16 @@ func (e *ClaudeEngine) extractBashTimeoutEnvVars(tools map[string]any) map[strin
 						timeoutMs = t
 					}
 				}
-				
+
 				if timeoutMs != "" {
-					fmt.Printf("DEBUG: Setting timeout env vars: %s\n", timeoutMs)
 					// Set the bash timeout environment variables
 					envVars["BASH_DEFAULT_TIMEOUT_MS"] = timeoutMs
 					envVars["BASH_MAX_TIMEOUT_MS"] = timeoutMs // Use the same value for max timeout
 				}
-			} else {
-				fmt.Printf("DEBUG: No timeout in bash config\n")
 			}
-		} else {
-			fmt.Printf("DEBUG: bash tool is not a map\n")
 		}
-	} else {
-		fmt.Printf("DEBUG: No bash tool found\n")
 	}
-	
+
 	return envVars
 }
 
diff --git a/pkg/workflow/js/collect_ndjson_output.cjs b/pkg/workflow/js/collect_ndjson_output.cjs
index 18c9e14553e..ac191838832 100644
--- a/pkg/workflow/js/collect_ndjson_output.cjs
+++ b/pkg/workflow/js/collect_ndjson_output.cjs
@@ -202,7 +202,7 @@ async function main() {
     // U+0014 (DC4) — represented here as "\u0014"
     // Escape control characters not allowed in JSON strings (U+0000 through U+001F)
     // Preserve common JSON escapes for \b, \f, \n, \r, \t and use \uXXXX for the rest.
-    const _ctrl = {8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r"};
+    const _ctrl = { 8: "\\b", 9: "\\t", 10: "\\n", 12: "\\f", 13: "\\r" };
     repaired = repaired.replace(/[\u0000-\u001F]/g, ch => {
       const c = ch.charCodeAt(0);
       return _ctrl[c] || "\\u" + c.toString(16).padStart(4, "0");
@@ -288,7 +288,6 @@ async function main() {
         return JSON.parse(repairedJson);
       } catch (repairError) {
         // If repair also fails, throw the error
-        console.log(`invalid input json: ${jsonStr}`);
         throw new Error(
           `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
         );
diff --git a/pkg/workflow/js/collect_ndjson_output.test.cjs b/pkg/workflow/js/collect_ndjson_output.test.cjs
index ef4ca8b7034..af0c9ad4e62 100644
--- a/pkg/workflow/js/collect_ndjson_output.test.cjs
+++ b/pkg/workflow/js/collect_ndjson_output.test.cjs
@@ -932,12 +932,12 @@ Line 3"}
       const parsedOutput = JSON.parse(outputCall[1]);
       expect(parsedOutput.items).toHaveLength(1);
       expect(parsedOutput.items[0].type).toBe("create-issue");
-      
+
       // Control chars (0x00, 0x01, 0x02) removed, tab and newline preserved
       const title = parsedOutput.items[0].title;
       expect(title).toBe("Control test"); // Control chars actually get removed completely
       expect(parsedOutput.items[0].body).toBe("End of test");
-      
+
       expect(parsedOutput.errors).toHaveLength(0);
     });
 
diff --git a/pkg/workflow/js/create_repository_security_advisory.cjs b/pkg/workflow/js/create_repository_security_advisory.cjs
index 1a556c2de3a..580c068ce39 100644
--- a/pkg/workflow/js/create_repository_security_advisory.cjs
+++ b/pkg/workflow/js/create_repository_security_advisory.cjs
@@ -32,14 +32,19 @@ async function main() {
 
   // Find all create-repository-security-advisory items
   const securityItems = validatedOutput.items.filter(
-    /** @param {any} item */ item => item.type === "create-repository-security-advisory"
+    /** @param {any} item */ item =>
+      item.type === "create-repository-security-advisory"
   );
   if (securityItems.length === 0) {
-    console.log("No create-repository-security-advisory items found in agent output");
+    console.log(
+      "No create-repository-security-advisory items found in agent output"
+    );
     return;
   }
 
-  console.log(`Found ${securityItems.length} create-repository-security-advisory item(s)`);
+  console.log(
+    `Found ${securityItems.length} create-repository-security-advisory item(s)`
+  );
 
   // Get the max configuration from environment variable
   const maxFindings = process.env.GITHUB_AW_SECURITY_REPORT_MAX
@@ -80,7 +85,9 @@ async function main() {
 
     // Validate required fields
     if (!securityItem.file) {
-      console.log('Missing required field "file" in repository security advisory item');
+      console.log(
+        'Missing required field "file" in repository security advisory item'
+      );
       continue;
     }
 
diff --git a/pkg/workflow/js/create_repository_security_advisory.test.cjs b/pkg/workflow/js/create_repository_security_advisory.test.cjs
index fa7977d2399..669194c8d46 100644
--- a/pkg/workflow/js/create_repository_security_advisory.test.cjs
+++ b/pkg/workflow/js/create_repository_security_advisory.test.cjs
@@ -54,7 +54,10 @@ describe("create_repository_security_advisory.cjs", () => {
   afterEach(() => {
     // Clean up any created files
     try {
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       if (fs.existsSync(sarifFile)) {
         fs.unlinkSync(sarifFile);
       }
@@ -157,7 +160,10 @@ describe("create_repository_security_advisory.cjs", () => {
       await eval(`(async () => { ${securityReportScript} })()`);
 
       // Check that SARIF file was created
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       expect(fs.existsSync(sarifFile)).toBe(true);
 
       // Check SARIF content
@@ -229,7 +235,10 @@ describe("create_repository_security_advisory.cjs", () => {
       await eval(`(async () => { ${securityReportScript} })()`);
 
       // Check that SARIF file was created with only 1 finding
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       expect(fs.existsSync(sarifFile)).toBe(true);
 
       const sarifContent = JSON.parse(fs.readFileSync(sarifFile, "utf8"));
@@ -291,7 +300,10 @@ describe("create_repository_security_advisory.cjs", () => {
       await eval(`(async () => { ${securityReportScript} })()`);
 
       // Check that SARIF file was created with only the 1 valid finding
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       expect(fs.existsSync(sarifFile)).toBe(true);
 
       const sarifContent = JSON.parse(fs.readFileSync(sarifFile, "utf8"));
@@ -327,7 +339,10 @@ describe("create_repository_security_advisory.cjs", () => {
 
       await eval(`(async () => { ${securityReportScript} })()`);
 
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       const sarifContent = JSON.parse(fs.readFileSync(sarifFile, "utf8"));
 
       // Check driver name
@@ -361,7 +376,10 @@ describe("create_repository_security_advisory.cjs", () => {
 
       await eval(`(async () => { ${securityReportScript} })()`);
 
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       const sarifContent = JSON.parse(fs.readFileSync(sarifFile, "utf8"));
 
       // Check default driver name
@@ -404,7 +422,10 @@ describe("create_repository_security_advisory.cjs", () => {
 
       await eval(`(async () => { ${securityReportScript} })()`);
 
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       const sarifContent = JSON.parse(fs.readFileSync(sarifFile, "utf8"));
 
       // Check first result has custom column
@@ -466,7 +487,10 @@ describe("create_repository_security_advisory.cjs", () => {
       await eval(`(async () => { ${securityReportScript} })()`);
 
       // Only the first valid finding should be processed
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       const sarifContent = JSON.parse(fs.readFileSync(sarifFile, "utf8"));
       expect(sarifContent.runs[0].results).toHaveLength(1);
       expect(sarifContent.runs[0].results[0].message.text).toBe(
@@ -517,7 +541,10 @@ describe("create_repository_security_advisory.cjs", () => {
 
       await eval(`(async () => { ${securityReportScript} })()`);
 
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       const sarifContent = JSON.parse(fs.readFileSync(sarifFile, "utf8"));
 
       // Check first result has custom rule ID
@@ -590,7 +617,10 @@ describe("create_repository_security_advisory.cjs", () => {
       await eval(`(async () => { ${securityReportScript} })()`);
 
       // Only the first valid finding should be processed
-      const sarifFile = path.join(process.cwd(), "repository-security-advisory.sarif");
+      const sarifFile = path.join(
+        process.cwd(),
+        "repository-security-advisory.sarif"
+      );
       const sarifContent = JSON.parse(fs.readFileSync(sarifFile, "utf8"));
       expect(sarifContent.runs[0].results).toHaveLength(1);
       expect(sarifContent.runs[0].results[0].message.text).toBe(

From d169e3a013241acb02c85f6665aa80778fe538ea Mon Sep 17 00:00:00 2001
From: Peli de Halleux <pelikhan@users.noreply.github.com>
Date: Wed, 10 Sep 2025 22:11:39 +0000
Subject: [PATCH 5/7] Add logging for invalid JSON input in workflow scripts

---
 .github/workflows/test-ai-inference-github-models.lock.yml       | 1 +
 .github/workflows/test-claude-add-issue-comment.lock.yml         | 1 +
 .github/workflows/test-claude-add-issue-labels.lock.yml          | 1 +
 .github/workflows/test-claude-command.lock.yml                   | 1 +
 .github/workflows/test-claude-create-issue.lock.yml              | 1 +
 .../test-claude-create-pull-request-review-comment.lock.yml      | 1 +
 .github/workflows/test-claude-create-pull-request.lock.yml       | 1 +
 .../test-claude-create-repository-security-advisory.lock.yml     | 1 +
 .github/workflows/test-claude-mcp.lock.yml                       | 1 +
 .github/workflows/test-claude-push-to-branch.lock.yml            | 1 +
 .github/workflows/test-claude-update-issue.lock.yml              | 1 +
 .github/workflows/test-codex-add-issue-comment.lock.yml          | 1 +
 .github/workflows/test-codex-add-issue-labels.lock.yml           | 1 +
 .github/workflows/test-codex-command.lock.yml                    | 1 +
 .github/workflows/test-codex-create-issue.lock.yml               | 1 +
 .../test-codex-create-pull-request-review-comment.lock.yml       | 1 +
 .github/workflows/test-codex-create-pull-request.lock.yml        | 1 +
 .../test-codex-create-repository-security-advisory.lock.yml      | 1 +
 .github/workflows/test-codex-mcp.lock.yml                        | 1 +
 .github/workflows/test-codex-push-to-branch.lock.yml             | 1 +
 .github/workflows/test-codex-update-issue.lock.yml               | 1 +
 .github/workflows/test-custom-safe-outputs.lock.yml              | 1 +
 .github/workflows/test-proxy.lock.yml                            | 1 +
 pkg/workflow/js/collect_ndjson_output.cjs                        | 1 +
 24 files changed, 24 insertions(+)

diff --git a/.github/workflows/test-ai-inference-github-models.lock.yml b/.github/workflows/test-ai-inference-github-models.lock.yml
index f3c785ff36c..1819321a287 100644
--- a/.github/workflows/test-ai-inference-github-models.lock.yml
+++ b/.github/workflows/test-ai-inference-github-models.lock.yml
@@ -772,6 +772,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-add-issue-comment.lock.yml b/.github/workflows/test-claude-add-issue-comment.lock.yml
index a7084328cb6..72ab6e0306e 100644
--- a/.github/workflows/test-claude-add-issue-comment.lock.yml
+++ b/.github/workflows/test-claude-add-issue-comment.lock.yml
@@ -959,6 +959,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-add-issue-labels.lock.yml b/.github/workflows/test-claude-add-issue-labels.lock.yml
index 4fb4ad59bda..f3a497f1144 100644
--- a/.github/workflows/test-claude-add-issue-labels.lock.yml
+++ b/.github/workflows/test-claude-add-issue-labels.lock.yml
@@ -959,6 +959,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-command.lock.yml b/.github/workflows/test-claude-command.lock.yml
index b5603e73481..1a322f6eca7 100644
--- a/.github/workflows/test-claude-command.lock.yml
+++ b/.github/workflows/test-claude-command.lock.yml
@@ -1132,6 +1132,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-create-issue.lock.yml b/.github/workflows/test-claude-create-issue.lock.yml
index 155490a980c..140c7a56dae 100644
--- a/.github/workflows/test-claude-create-issue.lock.yml
+++ b/.github/workflows/test-claude-create-issue.lock.yml
@@ -632,6 +632,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-create-pull-request-review-comment.lock.yml b/.github/workflows/test-claude-create-pull-request-review-comment.lock.yml
index 17f38a48cc8..0ad23c8fd94 100644
--- a/.github/workflows/test-claude-create-pull-request-review-comment.lock.yml
+++ b/.github/workflows/test-claude-create-pull-request-review-comment.lock.yml
@@ -905,6 +905,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-create-pull-request.lock.yml b/.github/workflows/test-claude-create-pull-request.lock.yml
index 8c396904912..f865722a127 100644
--- a/.github/workflows/test-claude-create-pull-request.lock.yml
+++ b/.github/workflows/test-claude-create-pull-request.lock.yml
@@ -708,6 +708,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-create-repository-security-advisory.lock.yml b/.github/workflows/test-claude-create-repository-security-advisory.lock.yml
index d7bf89c7ee5..3144b8d8c72 100644
--- a/.github/workflows/test-claude-create-repository-security-advisory.lock.yml
+++ b/.github/workflows/test-claude-create-repository-security-advisory.lock.yml
@@ -894,6 +894,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-mcp.lock.yml b/.github/workflows/test-claude-mcp.lock.yml
index 21f820d13b8..2c73de56f22 100644
--- a/.github/workflows/test-claude-mcp.lock.yml
+++ b/.github/workflows/test-claude-mcp.lock.yml
@@ -914,6 +914,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-push-to-branch.lock.yml b/.github/workflows/test-claude-push-to-branch.lock.yml
index 54d507bff1f..e98d685452e 100644
--- a/.github/workflows/test-claude-push-to-branch.lock.yml
+++ b/.github/workflows/test-claude-push-to-branch.lock.yml
@@ -801,6 +801,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-claude-update-issue.lock.yml b/.github/workflows/test-claude-update-issue.lock.yml
index 625379bb247..2b0d8362e3c 100644
--- a/.github/workflows/test-claude-update-issue.lock.yml
+++ b/.github/workflows/test-claude-update-issue.lock.yml
@@ -962,6 +962,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-add-issue-comment.lock.yml b/.github/workflows/test-codex-add-issue-comment.lock.yml
index 89f72388af3..d5720c22d7a 100644
--- a/.github/workflows/test-codex-add-issue-comment.lock.yml
+++ b/.github/workflows/test-codex-add-issue-comment.lock.yml
@@ -790,6 +790,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-add-issue-labels.lock.yml b/.github/workflows/test-codex-add-issue-labels.lock.yml
index e82ba0011b9..7864ed075e2 100644
--- a/.github/workflows/test-codex-add-issue-labels.lock.yml
+++ b/.github/workflows/test-codex-add-issue-labels.lock.yml
@@ -790,6 +790,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-command.lock.yml b/.github/workflows/test-codex-command.lock.yml
index 44936597dab..72368296027 100644
--- a/.github/workflows/test-codex-command.lock.yml
+++ b/.github/workflows/test-codex-command.lock.yml
@@ -1132,6 +1132,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-create-issue.lock.yml b/.github/workflows/test-codex-create-issue.lock.yml
index f012ff8d495..7010bb34082 100644
--- a/.github/workflows/test-codex-create-issue.lock.yml
+++ b/.github/workflows/test-codex-create-issue.lock.yml
@@ -463,6 +463,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-create-pull-request-review-comment.lock.yml b/.github/workflows/test-codex-create-pull-request-review-comment.lock.yml
index 934f3c1ab0d..56f98108191 100644
--- a/.github/workflows/test-codex-create-pull-request-review-comment.lock.yml
+++ b/.github/workflows/test-codex-create-pull-request-review-comment.lock.yml
@@ -736,6 +736,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-create-pull-request.lock.yml b/.github/workflows/test-codex-create-pull-request.lock.yml
index fcce878aa2f..f79e9670ca0 100644
--- a/.github/workflows/test-codex-create-pull-request.lock.yml
+++ b/.github/workflows/test-codex-create-pull-request.lock.yml
@@ -529,6 +529,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-create-repository-security-advisory.lock.yml b/.github/workflows/test-codex-create-repository-security-advisory.lock.yml
index 14ce16fa3cc..bf695a8e520 100644
--- a/.github/workflows/test-codex-create-repository-security-advisory.lock.yml
+++ b/.github/workflows/test-codex-create-repository-security-advisory.lock.yml
@@ -725,6 +725,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-mcp.lock.yml b/.github/workflows/test-codex-mcp.lock.yml
index de45ffbc591..a20902b6cab 100644
--- a/.github/workflows/test-codex-mcp.lock.yml
+++ b/.github/workflows/test-codex-mcp.lock.yml
@@ -742,6 +742,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-push-to-branch.lock.yml b/.github/workflows/test-codex-push-to-branch.lock.yml
index be9e303b559..f317d0a5d18 100644
--- a/.github/workflows/test-codex-push-to-branch.lock.yml
+++ b/.github/workflows/test-codex-push-to-branch.lock.yml
@@ -660,6 +660,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-codex-update-issue.lock.yml b/.github/workflows/test-codex-update-issue.lock.yml
index ce94c43b600..f83bc615003 100644
--- a/.github/workflows/test-codex-update-issue.lock.yml
+++ b/.github/workflows/test-codex-update-issue.lock.yml
@@ -793,6 +793,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-custom-safe-outputs.lock.yml b/.github/workflows/test-custom-safe-outputs.lock.yml
index 35b72eac0b6..12af6a0c957 100644
--- a/.github/workflows/test-custom-safe-outputs.lock.yml
+++ b/.github/workflows/test-custom-safe-outputs.lock.yml
@@ -645,6 +645,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/.github/workflows/test-proxy.lock.yml b/.github/workflows/test-proxy.lock.yml
index b90883d9d97..1fe0c0a7f77 100644
--- a/.github/workflows/test-proxy.lock.yml
+++ b/.github/workflows/test-proxy.lock.yml
@@ -875,6 +875,7 @@ jobs:
                     return JSON.parse(repairedJson);
                   } catch (repairError) {
                     // If repair also fails, throw the error
+                    console.log(`invalid input json: ${jsonStr}`);
                     throw new Error(
                       `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
                     );
diff --git a/pkg/workflow/js/collect_ndjson_output.cjs b/pkg/workflow/js/collect_ndjson_output.cjs
index ac191838832..c4dbd5adf74 100644
--- a/pkg/workflow/js/collect_ndjson_output.cjs
+++ b/pkg/workflow/js/collect_ndjson_output.cjs
@@ -288,6 +288,7 @@ async function main() {
         return JSON.parse(repairedJson);
       } catch (repairError) {
         // If repair also fails, throw the error
+        console.log(`invalid input json: ${jsonStr}`);
         throw new Error(
           `JSON parsing failed. Original: ${originalError.message}. After attempted repair: ${repairError.message}`
         );

From 42f9ad42f6755ea259d4e0b568bdb888b81f1353 Mon Sep 17 00:00:00 2001
From: Peli de Halleux <pelikhan@users.noreply.github.com>
Date: Wed, 10 Sep 2025 22:18:31 +0000
Subject: [PATCH 6/7] Add workflow and documentation for Test Claude Bash -
 Agentic Activity Overview

---
 .github/workflows/test-claude-bash.lock.yml | 635 ++++++++++++++++++++
 .github/workflows/test-claude-bash.md       |  24 +
 2 files changed, 659 insertions(+)
 create mode 100644 .github/workflows/test-claude-bash.lock.yml
 create mode 100644 .github/workflows/test-claude-bash.md

diff --git a/.github/workflows/test-claude-bash.lock.yml b/.github/workflows/test-claude-bash.lock.yml
new file mode 100644
index 00000000000..7d08540cdf2
--- /dev/null
+++ b/.github/workflows/test-claude-bash.lock.yml
@@ -0,0 +1,635 @@
+# This file was automatically generated by gh-aw. DO NOT EDIT.
+# To update this file, edit the corresponding .md file and run:
+#   gh aw compile
+
+name: "Test Claude Bash - Agentic Activity Overview"
+on:
+  workflow_dispatch: null
+
+permissions: {}
+
+concurrency:
+  group: "gh-aw-${{ github.workflow }}"
+
+run-name: "Test Claude Bash - Agentic Activity Overview"
+
+jobs:
+  test-claude-bash-agentic-activity-overview:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v5
+      - name: Generate Claude Settings
+        run: |
+          mkdir -p /tmp/.claude
+          cat > /tmp/.claude/settings.json << 'EOF'
+          {
+            "hooks": {
+              "PreToolUse": [
+                {
+                  "matcher": "WebFetch|WebSearch",
+                  "hooks": [
+                    {
+                      "type": "command",
+                      "command": ".claude/hooks/network_permissions.py"
+                    }
+                  ]
+                }
+              ]
+            }
+          }
+          EOF
+      - name: Generate Network Permissions Hook
+        run: |
+          mkdir -p .claude/hooks
+          cat > .claude/hooks/network_permissions.py << 'EOF'
+          #!/usr/bin/env python3
+          """
+          Network permissions validator for Claude Code engine.
+          Generated by gh-aw from engine network permissions configuration.
+          """
+          
+          import json
+          import sys
+          import urllib.parse
+          import re
+          
+          # Domain allow-list (populated during generation)
+          ALLOWED_DOMAINS = ["crl3.digicert.com","crl4.digicert.com","ocsp.digicert.com","ts-crl.ws.symantec.com","ts-ocsp.ws.symantec.com","crl.geotrust.com","ocsp.geotrust.com","crl.thawte.com","ocsp.thawte.com","crl.verisign.com","ocsp.verisign.com","crl.globalsign.com","ocsp.globalsign.com","crls.ssl.com","ocsp.ssl.com","crl.identrust.com","ocsp.identrust.com","crl.sectigo.com","ocsp.sectigo.com","crl.usertrust.com","ocsp.usertrust.com","s.symcb.com","s.symcd.com","json-schema.org","json.schemastore.org","archive.ubuntu.com","security.ubuntu.com","ppa.launchpad.net","keyserver.ubuntu.com","azure.archive.ubuntu.com","api.snapcraft.io","packagecloud.io","packages.cloud.google.com","packages.microsoft.com"]
+          
+          def extract_domain(url_or_query):
+              """Extract domain from URL or search query."""
+              if not url_or_query:
+                  return None
+              
+              if url_or_query.startswith(('http://', 'https://')):
+                  return urllib.parse.urlparse(url_or_query).netloc.lower()
+              
+              # Check for domain patterns in search queries
+              match = re.search(r'site:([a-zA-Z0-9.-]+\.[a-zA-Z]{2,})', url_or_query)
+              if match:
+                  return match.group(1).lower()
+              
+              return None
+          
+          def is_domain_allowed(domain):
+              """Check if domain is allowed."""
+              if not domain:
+                  # If no domain detected, allow only if not under deny-all policy
+                  return bool(ALLOWED_DOMAINS)  # False if empty list (deny-all), True if has domains
+              
+              # Empty allowed domains means deny all
+              if not ALLOWED_DOMAINS:
+                  return False
+              
+              for pattern in ALLOWED_DOMAINS:
+                  regex = pattern.replace('.', r'\.').replace('*', '.*')
+                  if re.match(f'^{regex}$', domain):
+                      return True
+              return False
+          
+          # Main logic
+          try:
+              data = json.load(sys.stdin)
+              tool_name = data.get('tool_name', '')
+              tool_input = data.get('tool_input', {})
+              
+              if tool_name not in ['WebFetch', 'WebSearch']:
+                  sys.exit(0)  # Allow other tools
+              
+              target = tool_input.get('url') or tool_input.get('query', '')
+              domain = extract_domain(target)
+              
+              # For WebSearch, apply domain restrictions consistently
+              # If no domain detected in search query, check if restrictions are in place
+              if tool_name == 'WebSearch' and not domain:
+                  # Since this hook is only generated when network permissions are configured,
+                  # empty ALLOWED_DOMAINS means deny-all policy
+                  if not ALLOWED_DOMAINS:  # Empty list means deny all
+                      print(f"Network access blocked: deny-all policy in effect", file=sys.stderr)
+                      print(f"No domains are allowed for WebSearch", file=sys.stderr)
+                      sys.exit(2)  # Block under deny-all policy
+                  else:
+                      print(f"Network access blocked for web-search: no specific domain detected", file=sys.stderr)
+                      print(f"Allowed domains: {', '.join(ALLOWED_DOMAINS)}", file=sys.stderr)
+                      sys.exit(2)  # Block general searches when domain allowlist is configured
+              
+              if not is_domain_allowed(domain):
+                  print(f"Network access blocked for domain: {domain}", file=sys.stderr)
+                  print(f"Allowed domains: {', '.join(ALLOWED_DOMAINS)}", file=sys.stderr)
+                  sys.exit(2)  # Block with feedback to Claude
+              
+              sys.exit(0)  # Allow
+              
+          except Exception as e:
+              print(f"Network validation error: {e}", file=sys.stderr)
+              sys.exit(2)  # Block on errors
+          
+          EOF
+          chmod +x .claude/hooks/network_permissions.py
+      - name: Setup MCPs
+        run: |
+          mkdir -p /tmp/mcp-config
+          cat > /tmp/mcp-config/mcp-servers.json << 'EOF'
+          {
+            "mcpServers": {
+              "github": {
+                "command": "docker",
+                "args": [
+                  "run",
+                  "-i",
+                  "--rm",
+                  "-e",
+                  "GITHUB_PERSONAL_ACCESS_TOKEN",
+                  "ghcr.io/github/github-mcp-server:sha-09deac4"
+                ],
+                "env": {
+                  "GITHUB_PERSONAL_ACCESS_TOKEN": "${{ secrets.GITHUB_TOKEN }}"
+                }
+              }
+            }
+          }
+          EOF
+      - name: Create prompt
+        env:
+          GITHUB_AW_PROMPT: /tmp/aw-prompts/prompt.txt
+        run: |
+          mkdir -p /tmp/aw-prompts
+          cat > $GITHUB_AW_PROMPT << 'EOF'
+          # Test Claude Bash - Agentic Activity Overview
+          
+          
+          Please run `gh aw logs -c 1000` and provide a brief summary of the agentic workflow activity.
+          
+          Look at the output and tell me:
+          1. How many workflow runs you can see
+          2. Which workflows appear most frequently 
+          3. Any patterns in success/failure rates
+          
+          Use the bash tool to run the command and analyze the results.
+          
+          EOF
+      - name: Print prompt to step summary
+        run: |
+          echo "## Generated Prompt" >> $GITHUB_STEP_SUMMARY
+          echo "" >> $GITHUB_STEP_SUMMARY
+          echo '``````markdown' >> $GITHUB_STEP_SUMMARY
+          cat $GITHUB_AW_PROMPT >> $GITHUB_STEP_SUMMARY
+          echo '``````' >> $GITHUB_STEP_SUMMARY
+        env:
+          GITHUB_AW_PROMPT: /tmp/aw-prompts/prompt.txt
+      - name: Generate agentic run info
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            
+            const awInfo = {
+              engine_id: "claude",
+              engine_name: "Claude Code",
+              model: "",
+              version: "",
+              workflow_name: "Test Claude Bash - Agentic Activity Overview",
+              experimental: false,
+              supports_tools_whitelist: true,
+              supports_http_transport: true,
+              run_id: context.runId,
+              run_number: context.runNumber,
+              run_attempt: process.env.GITHUB_RUN_ATTEMPT,
+              repository: context.repo.owner + '/' + context.repo.repo,
+              ref: context.ref,
+              sha: context.sha,
+              actor: context.actor,
+              event_name: context.eventName,
+              created_at: new Date().toISOString()
+            };
+            
+            // Write to /tmp directory to avoid inclusion in PR
+            const tmpPath = '/tmp/aw_info.json';
+            fs.writeFileSync(tmpPath, JSON.stringify(awInfo, null, 2));
+            console.log('Generated aw_info.json at:', tmpPath);
+            console.log(JSON.stringify(awInfo, null, 2));
+      - name: Upload agentic run info
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: aw_info.json
+          path: /tmp/aw_info.json
+          if-no-files-found: warn
+      - name: Execute Claude Code Action
+        id: agentic_execution
+        uses: anthropics/claude-code-base-action@v0.0.56
+        with:
+          # Allowed tools (sorted):
+          # - Bash(gh aw logs:*)
+          # - BashOutput
+          # - ExitPlanMode
+          # - Glob
+          # - Grep
+          # - KillBash
+          # - LS
+          # - NotebookRead
+          # - Read
+          # - Task
+          # - TodoWrite
+          # - mcp__github__download_workflow_run_artifact
+          # - mcp__github__get_code_scanning_alert
+          # - mcp__github__get_commit
+          # - mcp__github__get_dependabot_alert
+          # - mcp__github__get_discussion
+          # - mcp__github__get_discussion_comments
+          # - mcp__github__get_file_contents
+          # - mcp__github__get_issue
+          # - mcp__github__get_issue_comments
+          # - mcp__github__get_job_logs
+          # - mcp__github__get_me
+          # - mcp__github__get_notification_details
+          # - mcp__github__get_pull_request
+          # - mcp__github__get_pull_request_comments
+          # - mcp__github__get_pull_request_diff
+          # - mcp__github__get_pull_request_files
+          # - mcp__github__get_pull_request_reviews
+          # - mcp__github__get_pull_request_status
+          # - mcp__github__get_secret_scanning_alert
+          # - mcp__github__get_tag
+          # - mcp__github__get_workflow_run
+          # - mcp__github__get_workflow_run_logs
+          # - mcp__github__get_workflow_run_usage
+          # - mcp__github__list_branches
+          # - mcp__github__list_code_scanning_alerts
+          # - mcp__github__list_commits
+          # - mcp__github__list_dependabot_alerts
+          # - mcp__github__list_discussion_categories
+          # - mcp__github__list_discussions
+          # - mcp__github__list_issues
+          # - mcp__github__list_notifications
+          # - mcp__github__list_pull_requests
+          # - mcp__github__list_secret_scanning_alerts
+          # - mcp__github__list_tags
+          # - mcp__github__list_workflow_jobs
+          # - mcp__github__list_workflow_run_artifacts
+          # - mcp__github__list_workflow_runs
+          # - mcp__github__list_workflows
+          # - mcp__github__search_code
+          # - mcp__github__search_issues
+          # - mcp__github__search_orgs
+          # - mcp__github__search_pull_requests
+          # - mcp__github__search_repositories
+          # - mcp__github__search_users
+          allowed_tools: "Bash(gh aw logs:*),BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite,mcp__github__download_workflow_run_artifact,mcp__github__get_code_scanning_alert,mcp__github__get_commit,mcp__github__get_dependabot_alert,mcp__github__get_discussion,mcp__github__get_discussion_comments,mcp__github__get_file_contents,mcp__github__get_issue,mcp__github__get_issue_comments,mcp__github__get_job_logs,mcp__github__get_me,mcp__github__get_notification_details,mcp__github__get_pull_request,mcp__github__get_pull_request_comments,mcp__github__get_pull_request_diff,mcp__github__get_pull_request_files,mcp__github__get_pull_request_reviews,mcp__github__get_pull_request_status,mcp__github__get_secret_scanning_alert,mcp__github__get_tag,mcp__github__get_workflow_run,mcp__github__get_workflow_run_logs,mcp__github__get_workflow_run_usage,mcp__github__list_branches,mcp__github__list_code_scanning_alerts,mcp__github__list_commits,mcp__github__list_dependabot_alerts,mcp__github__list_discussion_categories,mcp__github__list_discussions,mcp__github__list_issues,mcp__github__list_notifications,mcp__github__list_pull_requests,mcp__github__list_secret_scanning_alerts,mcp__github__list_tags,mcp__github__list_workflow_jobs,mcp__github__list_workflow_run_artifacts,mcp__github__list_workflow_runs,mcp__github__list_workflows,mcp__github__search_code,mcp__github__search_issues,mcp__github__search_orgs,mcp__github__search_pull_requests,mcp__github__search_repositories,mcp__github__search_users"
+          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+          mcp_config: /tmp/mcp-config/mcp-servers.json
+          prompt_file: /tmp/aw-prompts/prompt.txt
+          settings: /tmp/.claude/settings.json
+          timeout_minutes: 5
+        env:
+          GITHUB_AW_PROMPT: /tmp/aw-prompts/prompt.txt
+      - name: Capture Agentic Action logs
+        if: always()
+        run: |
+          # Copy the detailed execution file from Agentic Action if available
+          if [ -n "${{ steps.agentic_execution.outputs.execution_file }}" ] && [ -f "${{ steps.agentic_execution.outputs.execution_file }}" ]; then
+            cp ${{ steps.agentic_execution.outputs.execution_file }} /tmp/test-claude-bash-agentic-activity-overview.log
+          else
+            echo "No execution file output found from Agentic Action" >> /tmp/test-claude-bash-agentic-activity-overview.log
+          fi
+          
+          # Ensure log file exists
+          touch /tmp/test-claude-bash-agentic-activity-overview.log
+      - name: Upload engine output files
+        uses: actions/upload-artifact@v4
+        with:
+          name: agent_outputs
+          path: |
+            output.txt
+          if-no-files-found: ignore
+      - name: Clean up engine output files
+        run: |
+          rm -f output.txt
+      - name: Parse agent logs for step summary
+        if: always()
+        uses: actions/github-script@v7
+        env:
+          AGENT_LOG_FILE: /tmp/test-claude-bash-agentic-activity-overview.log
+        with:
+          script: |
+            function main() {
+              const fs = require("fs");
+              try {
+                // Get the log file path from environment
+                const logFile = process.env.AGENT_LOG_FILE;
+                if (!logFile) {
+                  console.log("No agent log file specified");
+                  return;
+                }
+                if (!fs.existsSync(logFile)) {
+                  console.log(`Log file not found: ${logFile}`);
+                  return;
+                }
+                const logContent = fs.readFileSync(logFile, "utf8");
+                const markdown = parseClaudeLog(logContent);
+                // Append to GitHub step summary
+                core.summary.addRaw(markdown).write();
+              } catch (error) {
+                core.error(`Error parsing Claude log: ${error.message}`);
+                core.setFailed(error.message);
+              }
+            }
+            function parseClaudeLog(logContent) {
+              try {
+                const logEntries = JSON.parse(logContent);
+                if (!Array.isArray(logEntries)) {
+                  return "## Agent Log Summary\n\nLog format not recognized as Claude JSON array.\n";
+                }
+                let markdown = "## 🤖 Commands and Tools\n\n";
+                const toolUsePairs = new Map(); // Map tool_use_id to tool_result
+                const commandSummary = []; // For the succinct summary
+                // First pass: collect tool results by tool_use_id
+                for (const entry of logEntries) {
+                  if (entry.type === "user" && entry.message?.content) {
+                    for (const content of entry.message.content) {
+                      if (content.type === "tool_result" && content.tool_use_id) {
+                        toolUsePairs.set(content.tool_use_id, content);
+                      }
+                    }
+                  }
+                }
+                // Collect all tool uses for summary
+                for (const entry of logEntries) {
+                  if (entry.type === "assistant" && entry.message?.content) {
+                    for (const content of entry.message.content) {
+                      if (content.type === "tool_use") {
+                        const toolName = content.name;
+                        const input = content.input || {};
+                        // Skip internal tools - only show external commands and API calls
+                        if (
+                          [
+                            "Read",
+                            "Write",
+                            "Edit",
+                            "MultiEdit",
+                            "LS",
+                            "Grep",
+                            "Glob",
+                            "TodoWrite",
+                          ].includes(toolName)
+                        ) {
+                          continue; // Skip internal file operations and searches
+                        }
+                        // Find the corresponding tool result to get status
+                        const toolResult = toolUsePairs.get(content.id);
+                        let statusIcon = "❓";
+                        if (toolResult) {
+                          statusIcon = toolResult.is_error === true ? "❌" : "✅";
+                        }
+                        // Add to command summary (only external tools)
+                        if (toolName === "Bash") {
+                          const formattedCommand = formatBashCommand(input.command || "");
+                          commandSummary.push(`* ${statusIcon} \`${formattedCommand}\``);
+                        } else if (toolName.startsWith("mcp__")) {
+                          const mcpName = formatMcpName(toolName);
+                          commandSummary.push(`* ${statusIcon} \`${mcpName}(...)\``);
+                        } else {
+                          // Handle other external tools (if any)
+                          commandSummary.push(`* ${statusIcon} ${toolName}`);
+                        }
+                      }
+                    }
+                  }
+                }
+                // Add command summary
+                if (commandSummary.length > 0) {
+                  for (const cmd of commandSummary) {
+                    markdown += `${cmd}\n`;
+                  }
+                } else {
+                  markdown += "No commands or tools used.\n";
+                }
+                // Add Information section from the last entry with result metadata
+                markdown += "\n## 📊 Information\n\n";
+                // Find the last entry with metadata
+                const lastEntry = logEntries[logEntries.length - 1];
+                if (
+                  lastEntry &&
+                  (lastEntry.num_turns ||
+                    lastEntry.duration_ms ||
+                    lastEntry.total_cost_usd ||
+                    lastEntry.usage)
+                ) {
+                  if (lastEntry.num_turns) {
+                    markdown += `**Turns:** ${lastEntry.num_turns}\n\n`;
+                  }
+                  if (lastEntry.duration_ms) {
+                    const durationSec = Math.round(lastEntry.duration_ms / 1000);
+                    const minutes = Math.floor(durationSec / 60);
+                    const seconds = durationSec % 60;
+                    markdown += `**Duration:** ${minutes}m ${seconds}s\n\n`;
+                  }
+                  if (lastEntry.total_cost_usd) {
+                    markdown += `**Total Cost:** $${lastEntry.total_cost_usd.toFixed(4)}\n\n`;
+                  }
+                  if (lastEntry.usage) {
+                    const usage = lastEntry.usage;
+                    if (usage.input_tokens || usage.output_tokens) {
+                      markdown += `**Token Usage:**\n`;
+                      if (usage.input_tokens)
+                        markdown += `- Input: ${usage.input_tokens.toLocaleString()}\n`;
+                      if (usage.cache_creation_input_tokens)
+                        markdown += `- Cache Creation: ${usage.cache_creation_input_tokens.toLocaleString()}\n`;
+                      if (usage.cache_read_input_tokens)
+                        markdown += `- Cache Read: ${usage.cache_read_input_tokens.toLocaleString()}\n`;
+                      if (usage.output_tokens)
+                        markdown += `- Output: ${usage.output_tokens.toLocaleString()}\n`;
+                      markdown += "\n";
+                    }
+                  }
+                  if (
+                    lastEntry.permission_denials &&
+                    lastEntry.permission_denials.length > 0
+                  ) {
+                    markdown += `**Permission Denials:** ${lastEntry.permission_denials.length}\n\n`;
+                  }
+                }
+                markdown += "\n## 🤖 Reasoning\n\n";
+                // Second pass: process assistant messages in sequence
+                for (const entry of logEntries) {
+                  if (entry.type === "assistant" && entry.message?.content) {
+                    for (const content of entry.message.content) {
+                      if (content.type === "text" && content.text) {
+                        // Add reasoning text directly (no header)
+                        const text = content.text.trim();
+                        if (text && text.length > 0) {
+                          markdown += text + "\n\n";
+                        }
+                      } else if (content.type === "tool_use") {
+                        // Process tool use with its result
+                        const toolResult = toolUsePairs.get(content.id);
+                        const toolMarkdown = formatToolUse(content, toolResult);
+                        if (toolMarkdown) {
+                          markdown += toolMarkdown;
+                        }
+                      }
+                    }
+                  }
+                }
+                return markdown;
+              } catch (error) {
+                return `## Agent Log Summary\n\nError parsing Claude log: ${error.message}\n`;
+              }
+            }
+            function formatToolUse(toolUse, toolResult) {
+              const toolName = toolUse.name;
+              const input = toolUse.input || {};
+              // Skip TodoWrite except the very last one (we'll handle this separately)
+              if (toolName === "TodoWrite") {
+                return ""; // Skip for now, would need global context to find the last one
+              }
+              // Helper function to determine status icon
+              function getStatusIcon() {
+                if (toolResult) {
+                  return toolResult.is_error === true ? "❌" : "✅";
+                }
+                return "❓"; // Unknown by default
+              }
+              let markdown = "";
+              const statusIcon = getStatusIcon();
+              switch (toolName) {
+                case "Bash":
+                  const command = input.command || "";
+                  const description = input.description || "";
+                  // Format the command to be single line
+                  const formattedCommand = formatBashCommand(command);
+                  if (description) {
+                    markdown += `${description}:\n\n`;
+                  }
+                  markdown += `${statusIcon} \`${formattedCommand}\`\n\n`;
+                  break;
+                case "Read":
+                  const filePath = input.file_path || input.path || "";
+                  const relativePath = filePath.replace(
+                    /^\/[^\/]*\/[^\/]*\/[^\/]*\/[^\/]*\//,
+                    ""
+                  ); // Remove /home/runner/work/repo/repo/ prefix
+                  markdown += `${statusIcon} Read \`${relativePath}\`\n\n`;
+                  break;
+                case "Write":
+                case "Edit":
+                case "MultiEdit":
+                  const writeFilePath = input.file_path || input.path || "";
+                  const writeRelativePath = writeFilePath.replace(
+                    /^\/[^\/]*\/[^\/]*\/[^\/]*\/[^\/]*\//,
+                    ""
+                  );
+                  markdown += `${statusIcon} Write \`${writeRelativePath}\`\n\n`;
+                  break;
+                case "Grep":
+                case "Glob":
+                  const query = input.query || input.pattern || "";
+                  markdown += `${statusIcon} Search for \`${truncateString(query, 80)}\`\n\n`;
+                  break;
+                case "LS":
+                  const lsPath = input.path || "";
+                  const lsRelativePath = lsPath.replace(
+                    /^\/[^\/]*\/[^\/]*\/[^\/]*\/[^\/]*\//,
+                    ""
+                  );
+                  markdown += `${statusIcon} LS: ${lsRelativePath || lsPath}\n\n`;
+                  break;
+                default:
+                  // Handle MCP calls and other tools
+                  if (toolName.startsWith("mcp__")) {
+                    const mcpName = formatMcpName(toolName);
+                    const params = formatMcpParameters(input);
+                    markdown += `${statusIcon} ${mcpName}(${params})\n\n`;
+                  } else {
+                    // Generic tool formatting - show the tool name and main parameters
+                    const keys = Object.keys(input);
+                    if (keys.length > 0) {
+                      // Try to find the most important parameter
+                      const mainParam =
+                        keys.find(k =>
+                          ["query", "command", "path", "file_path", "content"].includes(k)
+                        ) || keys[0];
+                      const value = String(input[mainParam] || "");
+                      if (value) {
+                        markdown += `${statusIcon} ${toolName}: ${truncateString(value, 100)}\n\n`;
+                      } else {
+                        markdown += `${statusIcon} ${toolName}\n\n`;
+                      }
+                    } else {
+                      markdown += `${statusIcon} ${toolName}\n\n`;
+                    }
+                  }
+              }
+              return markdown;
+            }
+            function formatMcpName(toolName) {
+              // Convert mcp__github__search_issues to github::search_issues
+              if (toolName.startsWith("mcp__")) {
+                const parts = toolName.split("__");
+                if (parts.length >= 3) {
+                  const provider = parts[1]; // github, etc.
+                  const method = parts.slice(2).join("_"); // search_issues, etc.
+                  return `${provider}::${method}`;
+                }
+              }
+              return toolName;
+            }
+            function formatMcpParameters(input) {
+              const keys = Object.keys(input);
+              if (keys.length === 0) return "";
+              const paramStrs = [];
+              for (const key of keys.slice(0, 4)) {
+                // Show up to 4 parameters
+                const value = String(input[key] || "");
+                paramStrs.push(`${key}: ${truncateString(value, 40)}`);
+              }
+              if (keys.length > 4) {
+                paramStrs.push("...");
+              }
+              return paramStrs.join(", ");
+            }
+            function formatBashCommand(command) {
+              if (!command) return "";
+              // Convert multi-line commands to single line by replacing newlines with spaces
+              // and collapsing multiple spaces
+              let formatted = command
+                .replace(/\n/g, " ") // Replace newlines with spaces
+                .replace(/\r/g, " ") // Replace carriage returns with spaces
+                .replace(/\t/g, " ") // Replace tabs with spaces
+                .replace(/\s+/g, " ") // Collapse multiple spaces into one
+                .trim(); // Remove leading/trailing whitespace
+              // Escape backticks to prevent markdown issues
+              formatted = formatted.replace(/`/g, "\\`");
+              // Truncate if too long (keep reasonable length for summary)
+              const maxLength = 80;
+              if (formatted.length > maxLength) {
+                formatted = formatted.substring(0, maxLength) + "...";
+              }
+              return formatted;
+            }
+            function truncateString(str, maxLength) {
+              if (!str) return "";
+              if (str.length <= maxLength) return str;
+              return str.substring(0, maxLength) + "...";
+            }
+            // Export for testing
+            if (typeof module !== "undefined" && module.exports) {
+              module.exports = {
+                parseClaudeLog,
+                formatToolUse,
+                formatBashCommand,
+                truncateString,
+              };
+            }
+            main();
+      - name: Upload agent logs
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: test-claude-bash-agentic-activity-overview.log
+          path: /tmp/test-claude-bash-agentic-activity-overview.log
+          if-no-files-found: warn
+
diff --git a/.github/workflows/test-claude-bash.md b/.github/workflows/test-claude-bash.md
new file mode 100644
index 00000000000..b8341a79f43
--- /dev/null
+++ b/.github/workflows/test-claude-bash.md
@@ -0,0 +1,24 @@
+---
+engine: claude
+on:
+  workflow_dispatch:
+permissions:
+  contents: read
+tools:
+  bash:
+    timeout: 300
+    allowed: 
+      - "gh aw logs"
+---
+
+# Test Claude Bash - Agentic Activity Overview
+
+
+Please run `gh aw logs -c 1000` and provide a brief summary of the agentic workflow activity.
+
+Look at the output and tell me:
+1. How many workflow runs you can see
+2. Which workflows appear most frequently 
+3. Any patterns in success/failure rates
+
+Use the bash tool to run the command and analyze the results.

From c5ed9040a8f7d4ec00ca91e1b6ab473cc3bd8060 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 10 Sep 2025 22:30:27 +0000
Subject: [PATCH 7/7] Make bash timeout optional in workflow frontmatter

Co-authored-by: pelikhan <4175913+pelikhan@users.noreply.github.com>
---
 .github/workflows/test-claude-bash.lock.yml  |  4 +-
 pkg/parser/schemas/main_workflow_schema.json |  3 +-
 pkg/workflow/bash_timeout_test.go            | 48 ++++++++++++++++++++
 3 files changed, 51 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/test-claude-bash.lock.yml b/.github/workflows/test-claude-bash.lock.yml
index 7d08540cdf2..d9a147e1c41 100644
--- a/.github/workflows/test-claude-bash.lock.yml
+++ b/.github/workflows/test-claude-bash.lock.yml
@@ -223,7 +223,7 @@ jobs:
         uses: anthropics/claude-code-base-action@v0.0.56
         with:
           # Allowed tools (sorted):
-          # - Bash(gh aw logs:*)
+          # - Bash(gh aw logs)
           # - BashOutput
           # - ExitPlanMode
           # - Glob
@@ -278,7 +278,7 @@ jobs:
           # - mcp__github__search_pull_requests
           # - mcp__github__search_repositories
           # - mcp__github__search_users
-          allowed_tools: "Bash(gh aw logs:*),BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite,mcp__github__download_workflow_run_artifact,mcp__github__get_code_scanning_alert,mcp__github__get_commit,mcp__github__get_dependabot_alert,mcp__github__get_discussion,mcp__github__get_discussion_comments,mcp__github__get_file_contents,mcp__github__get_issue,mcp__github__get_issue_comments,mcp__github__get_job_logs,mcp__github__get_me,mcp__github__get_notification_details,mcp__github__get_pull_request,mcp__github__get_pull_request_comments,mcp__github__get_pull_request_diff,mcp__github__get_pull_request_files,mcp__github__get_pull_request_reviews,mcp__github__get_pull_request_status,mcp__github__get_secret_scanning_alert,mcp__github__get_tag,mcp__github__get_workflow_run,mcp__github__get_workflow_run_logs,mcp__github__get_workflow_run_usage,mcp__github__list_branches,mcp__github__list_code_scanning_alerts,mcp__github__list_commits,mcp__github__list_dependabot_alerts,mcp__github__list_discussion_categories,mcp__github__list_discussions,mcp__github__list_issues,mcp__github__list_notifications,mcp__github__list_pull_requests,mcp__github__list_secret_scanning_alerts,mcp__github__list_tags,mcp__github__list_workflow_jobs,mcp__github__list_workflow_run_artifacts,mcp__github__list_workflow_runs,mcp__github__list_workflows,mcp__github__search_code,mcp__github__search_issues,mcp__github__search_orgs,mcp__github__search_pull_requests,mcp__github__search_repositories,mcp__github__search_users"
+          allowed_tools: "Bash(gh aw logs),BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite,mcp__github__download_workflow_run_artifact,mcp__github__get_code_scanning_alert,mcp__github__get_commit,mcp__github__get_dependabot_alert,mcp__github__get_discussion,mcp__github__get_discussion_comments,mcp__github__get_file_contents,mcp__github__get_issue,mcp__github__get_issue_comments,mcp__github__get_job_logs,mcp__github__get_me,mcp__github__get_notification_details,mcp__github__get_pull_request,mcp__github__get_pull_request_comments,mcp__github__get_pull_request_diff,mcp__github__get_pull_request_files,mcp__github__get_pull_request_reviews,mcp__github__get_pull_request_status,mcp__github__get_secret_scanning_alert,mcp__github__get_tag,mcp__github__get_workflow_run,mcp__github__get_workflow_run_logs,mcp__github__get_workflow_run_usage,mcp__github__list_branches,mcp__github__list_code_scanning_alerts,mcp__github__list_commits,mcp__github__list_dependabot_alerts,mcp__github__list_discussion_categories,mcp__github__list_discussions,mcp__github__list_issues,mcp__github__list_notifications,mcp__github__list_pull_requests,mcp__github__list_secret_scanning_alerts,mcp__github__list_tags,mcp__github__list_workflow_jobs,mcp__github__list_workflow_run_artifacts,mcp__github__list_workflow_runs,mcp__github__list_workflows,mcp__github__search_code,mcp__github__search_issues,mcp__github__search_orgs,mcp__github__search_pull_requests,mcp__github__search_repositories,mcp__github__search_users"
           anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
           mcp_config: /tmp/mcp-config/mcp-servers.json
           prompt_file: /tmp/aw-prompts/prompt.txt
diff --git a/pkg/parser/schemas/main_workflow_schema.json b/pkg/parser/schemas/main_workflow_schema.json
index 31779988fcd..a2b5e4c4f33 100644
--- a/pkg/parser/schemas/main_workflow_schema.json
+++ b/pkg/parser/schemas/main_workflow_schema.json
@@ -1031,8 +1031,7 @@
                   }
                 }
               },
-              "additionalProperties": false,
-              "required": ["timeout"]
+              "additionalProperties": false
             }
           ]
         },
diff --git a/pkg/workflow/bash_timeout_test.go b/pkg/workflow/bash_timeout_test.go
index 539cabb0821..4a477b31ae9 100644
--- a/pkg/workflow/bash_timeout_test.go
+++ b/pkg/workflow/bash_timeout_test.go
@@ -61,6 +61,22 @@ func TestBashToolTimeout(t *testing.T) {
 			},
 			expected: "Bash,BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite",
 		},
+		{
+			name: "bash without timeout should work",
+			tools: map[string]any{
+				"bash": map[string]any{
+					"commands": []any{"echo", "ls"},
+				},
+			},
+			expected: "Bash(echo),Bash(ls),BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite",
+		},
+		{
+			name: "bash object without timeout or commands should work",
+			tools: map[string]any{
+				"bash": map[string]any{},
+			},
+			expected: "Bash,BashOutput,ExitPlanMode,Glob,Grep,KillBash,LS,NotebookRead,Read,Task,TodoWrite",
+		},
 	}
 
 	for _, tt := range tests {
@@ -139,6 +155,38 @@ func TestExpandNeutralToolsWithBashTimeout(t *testing.T) {
 				},
 			},
 		},
+		{
+			name: "bash tool without timeout should not include timeout section",
+			input: map[string]any{
+				"bash": map[string]any{
+					"commands": []any{"echo", "ls"},
+				},
+			},
+			expected: map[string]any{
+				"claude": map[string]any{
+					"allowed": map[string]any{
+						"Bash": []any{"echo", "ls"},
+					},
+				},
+			},
+		},
+		{
+			name: "mixed tools with bash without timeout",
+			input: map[string]any{
+				"bash": map[string]any{
+					"allowed": []any{"git"},
+				},
+				"web-fetch": nil,
+			},
+			expected: map[string]any{
+				"claude": map[string]any{
+					"allowed": map[string]any{
+						"Bash":     []any{"git"},
+						"WebFetch": nil,
+					},
+				},
+			},
+		},
 	}
 
 	for _, tt := range tests {