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GitHub Issue #159: AssayExportImportTest fix to use assay designer UI to add transform script #3139

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Merged
cnathe merged 1 commit into from
Aug 4, 2026
Merged

GitHub Issue #159: AssayExportImportTest fix to use assay designer UI to add transform script #3139

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13 changes: 11 additions & 2 deletions src/org/labkey/test/tests/AssayExportImportTest.java
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Original file line number Diff line number Diff line change
Expand Up @@ -166,7 +166,6 @@ private Integer createSimpleProjectAndAssay(String projectName, String assayName
Connection cn = createDefaultConnection();
Protocol protocol = new GetProtocolCommand("General").execute(cn, projectName).getProtocol();
protocol.setName(assayName);
protocol.setProtocolTransformScripts(List.of(new File(SAMPLE_DATA_LOCATION, PERL_SCRIPT).getAbsolutePath()));
protocol.setSaveScriptFiles(true);
protocol.setEditableResults(true);
protocol.setEditableRuns(true);
Expand Down Expand Up @@ -199,7 +198,17 @@ private Integer createSimpleProjectAndAssay(String projectName, String assayName
resultsFields.add(new FieldDefinition("resultFileField", ColumnType.File));
domains.get("Data Fields").setFields(resultsFields);

return new SaveProtocolCommand(protocol).execute(cn, projectName).getProtocol().getProtocolId();
Integer protocolId = new SaveProtocolCommand(protocol).execute(cn, projectName).getProtocol().getProtocolId();

// GitHub Issue #159: The transform script must live in the assay's "@scripts" directory, so add it through the
// designer's file upload rather than setting an absolute path on the protocol via the API.
log("Add the transform script '" + PERL_SCRIPT + "' to the assay design using the designer's file upload.");
goToProjectHome(projectName);
ReactAssayDesignerPage assayDesignerPage = ReactAssayDesignerPage.beginAt(this, projectName, protocolId, "General", getURL().toString());
assayDesignerPage.addTransformScript(new File(SAMPLE_DATA_LOCATION, PERL_SCRIPT));
assayDesignerPage.clickFinish();

return protocolId;
}

public void addNewField(String projectName, String assayName, FieldDefinition newField)
Expand Down