DOC: Update shelley usage#3
Open
fredjaya wants to merge 10 commits into
Open
Conversation
Replaced the original samtools example with bwa-mem2 because the most recently updated samtools version contains multiple builds and does not exist in the shpc registry yet. bwa-mem2 has a straightforward installation
✅ Deploy Preview for bioshell-guide-preview ready!
To edit notification comments on pull requests, go to your Netlify project configuration. |
fredjaya
marked this pull request as ready for review
July 24, 2026 04:31
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
tools.mdkeeps cvmfs, shpc explanation introtools.mdshelley "getting started" replaced existing examples and shpc usageshelley-howto.mdfor more specific shelley use cases