VarBench

Benchmarking variant callers for long read data

Data

All data is aligned to GRCh38. We use the genome in a bottle (GIAB) truthset v3.3.2 from NA12878 DNA.

1. Illumina, 30x & 300x coverage, novoalign
2. Ultralong Oxford Nanopore
3. Pacbio Hifi

"Until it is published, please cite http://www.nature.com/nbt/journal/v32/n3/full/nbt.2835.html (doi:10.1038/nbt.2835) and http://www.nature.com/articles/sdata201625 (doi:10.1038/sdata.2016.25) when using these calls."

Documentation

See our wiki for all of our documentation!