ci(dependabot): bump the actions group with 2 updates

.github/workflows/ci.yml

@@ -15,13 +15,13 @@ jobs:
   check-manifest:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
       - run: pipx run check-manifest
 
   pyright:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
       - uses: astral-sh/setup-uv@v7
         with:
           enable-cache: true
@@ -46,8 +46,33 @@ jobs:
           - os: macos-latest
             gui: wxpython
             python-version: "3.10"
+          # FIXME: Prone to segfaults
+          - os: macos-latest
+            gui: pyside
+            canvas: vispy
+          # FIXME: Prone to segfaults
+          - os: macos-latest
+            gui: pyqt
+            canvas: vispy
 
         include:
+          # Check macos+vispy
+          - os: macos-15
+            python-version: "3.13"
+            gui: pyside
+            canvas: vispy
+          - os: macos-15
+            python-version: "3.13"
+            gui: pyqt
+            canvas: vispy
+          - os: macos-15
+            python-version: "3.10"
+            gui: pyside
+            canvas: vispy
+          - os: macos-15
+            python-version: "3.10"
+            gui: pyqt
+            canvas: vispy
           # spot-check a few more python versions
           - os: ubuntu-latest
             python-version: "3.12"
@@ -71,7 +96,7 @@ jobs:
             canvas: pygfx
 
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
       - uses: astral-sh/setup-uv@v7
         with:
           enable-cache: true
@@ -105,7 +130,7 @@ jobs:
         gui: [pyqt, jupyter]
         canvas: [vispy, pygfx]
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
       - uses: astral-sh/setup-uv@v7
         with:
           enable-cache: true
@@ -130,7 +155,7 @@ jobs:
         python-version: ["3.10", "3.13"]
 
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
       - uses: astral-sh/setup-uv@v7
         with:
           enable-cache: true
@@ -157,11 +182,11 @@ jobs:
 
   # make sure we can build docs without error
   test-docs:
-    runs-on: macos-latest # nicer screenshots
+    runs-on: macos-15 # nicer screenshots
     env:
       UV_PYTHON: "3.13"
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
       - uses: astral-sh/setup-uv@v7
       - name: 📚 Build docs
         run: uv run --group docs mkdocs build --strict
@@ -181,7 +206,7 @@ jobs:
       contents: write
 
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
         with:
           fetch-depth: 0
 
@@ -198,7 +223,7 @@ jobs:
       - name: 🚢 Publish to PyPI
         uses: pypa/gh-action-pypi-publish@release/v1
 
-      - uses: softprops/action-gh-release@v2
+      - uses: softprops/action-gh-release@v3
         with:
           generate_release_notes: true
           files: "./dist/*"

.github/workflows/deploy_docs.yml

@@ -11,10 +11,10 @@ permissions:
 
 jobs:
   deploy:
-    runs-on: macos-latest  # nicer screenshots
+    runs-on: macos-15  # nicer screenshots
     if: github.repository == 'pyapp-kit/ndv'
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
         with:
           fetch-depth: 0
       - uses: astral-sh/setup-uv@v7

pyproject.toml

@@ -78,6 +78,8 @@ array-libs = [
     "aiohttp>=3.11.11",
     "dask[array]>=2024.8.0",
     "jax[cpu]>=0.4.30",
+    # TODO: numba<=0.65 capped numpy<2.5 for some reason. When numba>0.65 ships, remove this pin
+    "numpy<2.5",
     "pooch>=1.8.2",
     "pyopencl>=2025.1",
     "pyopencl[pocl]>=2025.1 ; sys_platform == 'linux'",
@@ -219,6 +221,8 @@ filterwarnings = [
     # unsolved python 3.10 warning on shutdown, either xarray or dask
     "ignore:unclosed transport:ResourceWarning",
     "ignore:Jupyter is migrating its paths",
+    # See https://github.com/pygfx/pygfx/pull/1306 and https://github.com/vispy/vispy/pull/2757
+    "ignore:Setting the shape on a NumPy array has been deprecated in NumPy 2.5:DeprecationWarning:pygfx.*|vispy.*",
 ]
 markers = ["allow_leaks: mark test to allow widget leaks"]
 

src/ndv/data.py

@@ -28,7 +28,7 @@ def nd_sine_wave(
     half_per = base_frequency * np.pi
     x = np.linspace(-half_per, half_per, nx)
     y = np.linspace(-half_per, half_per, ny)
-    y, x = np.meshgrid(y, x)
+    yy, xx = np.meshgrid(y, x)
 
     # Iterate through each parameter in the higher dimensions
     for phase_idx in range(phase_dim):
@@ -41,7 +41,7 @@ def nd_sine_wave(
                 # Calculate angle
                 angle = np.pi / angle_dim * angle_idx
                 # Rotate x and y coordinates
-                xr = np.cos(angle) * x - np.sin(angle) * y
+                xr = np.cos(angle) * xx - np.sin(angle) * yy
 
                 # Compute the sine wave
                 sine_wave = (amplitude * 0.5) * np.sin(frequency * xr + phase)