kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
Visualization package for kmeRs similarity score matrix
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
Generate K-mer spectra to observe modalities of distributions
A collection of various biopython scripts.
Este projeto foi desenvolvido como trabalho prático da disciplina Tópicos em Bioinformática e tem como objetivo implementar um sistema para reconstrução de sequências genéticas a partir de fragmentos conhecidos como k-mers.
[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE
Benchmarks and evaluation scripts for the Fulgor index.
Coding problems from course 1 of the Bioinformatics specialization
This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.
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