Fast k-mer based tool for multi locus sequence typing (MLST)
EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic research.
In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
List and download schemes from pubMLST.org and other BIGSDB servers
A species‑specific bioinformatics suite for rapid and accessible Pseudomonas aeruginosa genomic analysis
Kleboscope is A gene‑centric, species‑optimized computational pipeline for comprehensive Klebsiella pneumoniae genomic surveillance
A Tailored Computational Workflow Enabling Rapid, User-Friendly Genotyping and Epidemiological Surveillance of the Enterobacter cloacae Complex
mlst2dist.py computes a distance matrix from a chewBBACA MLST alleles table, using Hamming Distance modified with correction for missing data
A tool for conducting a gene screen on assemblies, producing an SRST2-like output.
Chlamydia trachomatis Genome Assembly Pipeline
Automated bacterial genomic analysis · AI clinical interpretation · PCR primer design
multi-locus sequence type clade classifier for Clostridioides difficile
Dynamically Optimized Reference for Adaptive Sampling (DORAS)
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