mutect2
Here are 5 public repositories matching this topic...
A Snakemake pipeline for copy number variant calling without normal tissue samples
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Jul 31, 2025 - Python
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
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Mar 17, 2025 - Python
Research-use full-stack platform for matched tumor–normal somatic variant calling with React, FastAPI, Celery, Nextflow, SLURM, Apptainer, nf-core/sarek, GATK Mutect2, MultiQC, and secure results delivery.
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Jul 24, 2026 - Python
Reproducible somatic variant calling pipeline using Python, BWA, samtools, minimap2 and GATK Mutect2.
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Jun 19, 2026 - Python
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