API for linked biological knowledge
-
Updated
Apr 26, 2022 - Python
#
phenotypes
Here are 21 public repositories matching this topic...
ProCyon: A multimodal foundation model for protein phenotypes
-
Updated
Nov 25, 2025 - Python
Learn interpretable computational phenotyping models from k-merized genomic data
-
Updated
Aug 9, 2022 - Python
Flexible analysis of high-content CRISPR screening
crispr-analysis crispr phenotypes crispr-cas9 functional-genomics ngs-analysis perturbation-screen sequencing-data crispr-cas12
-
Updated
Mar 6, 2026 - Python
knowledge-graph named-entity-recognition microbial-genomics microbial-trait-prediction microbiology metabolism traits phenotypes data-modeling microbial-genomes environments chemicals microbial-ecology chebi envo anatomical-knowledge ncbitaxonomy cell-shapes microbial-traits microbial-growth
-
Updated
Jul 20, 2026 - Python
ComptoxAI - An artificial Intelligence toolkit for computational toxicology
-
Updated
Jul 10, 2026 - Python
A Silver Standard Corpus of Human Phenotype-Gene Relations
-
Updated
Oct 6, 2022 - Python
EXPERIMENTAL rendering of phenopackets in linkml
-
Updated
Jul 3, 2024 - Python
phenofhy is a Python package for phenotype analysis in the Our Future Health trusted research environment
-
Updated
May 18, 2026 - Python
Django app for parsing/loading Phenotype ontologies (HPO, MONDO, OncoTree, etc)
-
Updated
Feb 7, 2026 - Python
A Bio2BEL package for the Medical Subject Headings (MeSH; https://meshb.nlm.nih.gov)
-
Updated
Aug 2, 2019 - Python
-
Updated
Jul 1, 2020 - Python
A comprehensive bioinformatics pipeline for downloading and analyzing genes associated with specific phenotypes from multiple biological databases. This package provides both R scripts for gene retrieval and Python analysis tools for downstream analysis.
bioinformatics r genomics computational-biology gtex phenotypes uniprot opentargets kegg reactome disgenet disease-gene-association hpo omim gene-prioritization literature-mining string-db phenotype-to-gene
-
Updated
Apr 28, 2026 - Python
Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.
-
Updated
Apr 10, 2026 - Python
A Bio2BEL package for mir2disease (http://www.mir2disease.org)
-
Updated
Apr 25, 2018 - Python
PhenoQC is a lightweight, efficient, and user-friendly toolkit designed to perform comprehensive quality control (QC) on phenotypic datasets. It ensures that data adheres to standardized formats, maintains consistency, and is harmonized with recognized ontologies.
-
Updated
Aug 15, 2025 - Python
Analyse des phénotypes dans les réseaux de régulation génétique: étude de cas du métabolisme énergétique dans le cancer du pancréas.
-
Updated
Jun 17, 2020 - Python
AI-powered rare disease diagnosis engine that maps your symptoms to diseases and genes using knowledge graphs and machine learning — because 7 years is too long to wait for an answer.
-
Updated
Jun 9, 2026 - Python
-
Updated
Aug 9, 2022 - Python
A Bio2BEL package for converting the Human Phenotype Ontology (HP) to BEL
-
Updated
Mar 10, 2019 - Python
Improve this page
Add a description, image, and links to the phenotypes topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the phenotypes topic, visit your repo's landing page and select "manage topics."