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Scindices / HannesStark--EquiBind

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

status-active lang-python interface-cli method-deep-learning role-application domain-structural-biology entity-protein entity-small-molecule status-published scope-focused domain-drug-discovery task-docking entity-complex interface-gpu method-geometric-learning

Updated Feb 19, 2025
Python

Scindices / CamilaClemente--FrustraPocket

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Predict protein-ligand and catalytic pockets and perform molecular docking of a specific ligand to each predicted pocket.

lang-python status-archived interface-cli role-application domain-structural-biology entity-protein entity-small-molecule scope-focused domain-drug-discovery task-pocket-detection task-docking task-binding-site method-physics method-machine-learning entity-complex

Updated Dec 15, 2022
Python

Scindices / gcorso--DiffDock

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Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

status-active lang-python interface-cli method-deep-learning role-application domain-structural-biology entity-protein entity-small-molecule status-published scope-focused domain-drug-discovery task-docking entity-complex interface-gpu method-diffusion method-geometric-learning

Updated May 2, 2025
Python

Scindices / Valdes-Tresanco-MS--AutoDockTools_py3

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Python3 translation of AutoDockTools

role-library lang-python status-archived interface-cli entity-protein entity-small-molecule interface-api scope-focused domain-drug-discovery task-docking entity-complex method-rule-based task-ligand-prep ecosystem-autodock

Updated May 31, 2024
Python

Scindices / oddt--oddt

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Open Drug Discovery Toolkit

lang-python status-archived domain-cheminformatics method-chemoinformatics entity-protein entity-small-molecule interface-api status-published status-packaged-pypi status-packaged-conda domain-drug-discovery task-docking method-machine-learning entity-complex role-toolkit scope-swissknife task-featurization task-interaction-analysis

Updated Dec 13, 2022
Python

Scindices / coleygroup--pyscreener

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pythonic interface to virtual screening software

status-active role-library lang-python interface-cli task-workflow role-application domain-cheminformatics method-chemoinformatics entity-protein entity-small-molecule interface-api status-published status-packaged-pypi scope-focused domain-drug-discovery task-docking method-physics entity-complex

Updated Sep 4, 2025
Python

Scindices / forlilab--Meeko

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Interface for AutoDock, molecule parameterization

Updated Jul 10, 2026
Python

Scindices / plinder-org--plinder

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Protein Ligand INteraction Dataset and Evaluation Resource

status-active lang-python interface-cli domain-structural-biology entity-protein entity-small-molecule interface-api status-published status-packaged-pypi status-packaged-conda scope-focused domain-drug-discovery task-docking entity-complex method-statistics task-benchmark-dataset role-dataset

Updated Jul 25, 2026
Python

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task-docking

Here are 8 public repositories matching this topic...

Scindices / HannesStark--EquiBind

Scindices / CamilaClemente--FrustraPocket

Scindices / gcorso--DiffDock

Scindices / Valdes-Tresanco-MS--AutoDockTools_py3

Scindices / oddt--oddt

Scindices / coleygroup--pyscreener

Scindices / forlilab--Meeko

Scindices / plinder-org--plinder

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